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[178690_s_at]

Description F33E2.5 /REP_DB=WormBase Gene ID /WP=CE09906 /TR=O01702 /GB=CAB06543.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      6grp_total > 59      4grp_total > 50      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 137.7
(-3)
P 		237.3
(3)
P 		140.4
(-2.8)
A 		152.9
(-2.1)
A 		100
B 168.5
(-0.5)
P 		175.6
(-0.3)
P 		269.2
(3)
M 		98.8
(-3)
A 		170
C 161
(-2.1)
P 		193.8
(3)
M 		155.1
(-3)
A 		166.1
(-1.3)
A 		39
avr 155.7
(-1.4) 		202.2
(3) 		188.2
(1.7) 		139.3
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 390
1 2 3 4 5 6 range
A 344.3
(1.7)
P 		70.4
(-3)
P 		110.5
(-2.3)
P 		124.6
(-2.1)
P 		205.5
(-0.7)
P 		418.5
(3)
P 		348
B 241.8
(-0.7)
P 		106.5
(-2.9)
P 		101.9
(-3)
P 		124.1
(-2.6)
P 		191.6
(-1.5)
P 		460.1
(3)
P 		358
C 161.6
(-1.9)
P 		101.4
(-3)
A 		108.3
(-2.9)
A 		156.8
(-2)
P 		178.9
(-1.6)
P 		424.2
(3)
P 		323
avr 249.2
(-0.3) 		92.8
(-3) 		106.9
(-2.8) 		135.2
(-2.3) 		192
(-1.3) 		434.3
(3) 		342
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 50.1
(2.7)
P 		51.5
(3)
P 		36.7
(-0.1)
A 		22.4
(-3)
A 		29
B 53.7
(1.7)
P 		43.4
(0.2)
P 		62.4
(3)
M 		21.1
(-3)
A 		41
C 53.3
(2.5)
P 		55.7
(3)
M 		54.1
(2.7)
A 		28
(-3)
A 		28
avr 52.4
(3) 		50.2
(2.5) 		51.1
(2.7) 		23.8
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 63.5
(0)
P 		25
(-2.9)
P 		24.1
(-3)
P 		31.6
(-2.4)
P 		62
(-0.1)
P 		101.9
(3)
P 		78
B 84.2
(-0.6)
P 		35.4
(-2.6)
P 		24.7
(-3)
P 		32.9
(-2.7)
P 		77.8
(-0.8)
P 		171.6
(3)
P 		147
C 59.9
(-1.3)
P 		30.9
(-2.8)
A 		27.6
(-3)
A 		31.5
(-2.8)
P 		57.9
(-1.4)
P 		142
(3)
P 		114
avr 69.2
(-0.7) 		30.4
(-2.7) 		25.5
(-3) 		32
(-2.7) 		65.9
(-0.9) 		138.5
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178690_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2344
Sequence Type Exemplar sequence
Representative Public ID F33E2.5 NCBI
Target Description F33E2.5 /REP_DB=WormBase Gene ID /WP=CE09906 /TR=O01702 /GB=CAB06543.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060790 NCBI Caenorhabditis elegans F33E2.5 (F33E2.5) mRNA, complete cds. 11/11 None
SNAP00000035925 ENSEMBL cdna:SNAP chromosome:CEL140:I:12599307:12600406:-1 11/11 None
GENEFINDER00000035929 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12599307:12600472:-1 11/11 None
F33E2.5.2 ENSEMBL cdna:known chromosome:CEL140:I:12599188:12600473:-1 gene:F33E2.5 11/11 None
F33E2.5.1 ENSEMBL cdna:known chromosome:CEL140:I:12599246:12600473:-1 gene:F33E2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12599237-12600400(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33E2.5
Entrez Gene 173129 Entrez gene
SwissProt O01702 EMBL-EBI
WormBase CE09906 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB06543 Hypothetical protein F33E2.5 [Caenorhabditis elegans] ref|NP_493191.1| F33E2.5 [Caenorhabditis elegans] 1.0E-172
blast CAB06543 Hypothetical protein F33E2.5 [Caenorhabditis elegans] ref|NP_493191.1| F33E2.5 [Caenorhabditis elegans] 1.0E-160
blast CAE64118 Hypothetical protein CBG08730 [Caenorhabditis briggsae] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:178690_S_AT
gccaactacatcgccgtgtcaatggctttgccaaacttcaagatcggccaaaactgtcat
gacttccagcctctggactggtacaagaacatcaaggggtacttcacatataaaaagatc
accgaacaagtccaagccgcctacttcaacgatgaagcggggaatcagttcctcgccggc
gtctgctactacgcgactcccgccggcaagtgggtcgccaaacttcaaaccgagcaaact
ctactgcgatttgagttccagaaagccgaaccgttccccttgaacagtaaaagtcgtttc
gacacgaaggcgttcaagaaattcgcgagatacgggagatattgtgagacggaaggctgt
cgagttttagtttgggtaggaaaagccgatggtcagattgtgcatctgaactatcatcct
gtgtactgcatgcaatggactaaaggatgtgctgagtgcgccaaggatcactttgagtac
atgtggattgctccagaagagcccgttgtacaaaagagcaaggaagaagattatatctta
aaagctcccgaggacaaggatctcagcgatttcgaccaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAACTACATCGCCGTGTCAATGG 154 277 268 Antisense
ATCGGCCAAAACTGTCATGACTTCC 386 7 310 Antisense
GACTTCCAGCCTCTGGACTGGTACA 507 369 328 Antisense
AAGATCACCGAACAAGTCCAAGCCG 236 155 382 Antisense
CAAGCCGCCTACTTCAACGATGAAG 380 185 400 Antisense
TGAAGCGGGGAATCAGTTCCTCGCC 8 573 420 Antisense
TGGGTCGCCAAACTTCAAACCGAGC 383 495 478 Antisense
AACCGAGCAAACTCTACTGCGATTT 146 145 495 Antisense
TGAACTATCATCCTGTGTACTGCAT 647 571 674 Antisense
GATGTGCTGAGTGCGCCAAGGATCA 185 409 713 Antisense
GGATCTCAGCGATTTCGACCAACTA 47 513 825 Antisense
Sequence Source Affymetrix Proprietary Database