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[178688_s_at]

Description K08D8.3 /REP_DB=WormBase Gene ID /WP=CE21042 /TR=Q21329 /GB=CAA97434.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 78.8
(-1)
P 		109.6
(0.1)
P 		189.2
(3)
P 		24.8
(-3)
A 		164
B 56.3
(-1.6)
P 		174.5
(2.2)
P 		201.3
(3)
P 		10.4
(-3)
A 		191
C 99.9
(-1.1)
M 		123.2
(-0.1)
P 		203
(3)
P 		50.4
(-3)
A 		153
avr 78.3
(-1.2) 		135.8
(0.8) 		197.8
(3) 		28.5
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 93.3
(2.3)
A 		79.3
(-1.4)
A 		95.8
(3)
A 		90.3
(1.5)
P 		73.1
(-3)
A 		80.8
(-1)
P 		23
B 86
(0.3)
P 		48.4
(-3)
A 		116.1
(3)
A 		98.7
(1.5)
P 		79.5
(-0.2)
P 		68.9
(-1.2)
P 		68
C 73.9
(0.4)
P 		21.8
(-3)
A 		77.1
(0.6)
P 		101.7
(2.2)
P 		114.5
(3)
P 		68.5
(0)
P 		93
avr 84.4
(1.4) 		49.8
(-3) 		96.3
(2.9) 		96.9
(3) 		89
(2) 		72.7
(-0.1) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 28.7
(0.3)
P 		23.8
(-0.4)
P 		49.5
(3)
P 		3.6
(-3)
A 		46
B 18
(-0.9)
P 		43.1
(2.5)
P 		46.6
(3)
P 		2.2
(-3)
A 		44
C 33.1
(-0.6)
M 		35.4
(-0.4)
P 		70.7
(3)
P 		8.5
(-3)
A 		62
avr 26.6
(-0.4) 		34.1
(0.5) 		55.6
(3) 		4.8
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 17.2
(-3)
A 		28.2
(3)
A 		20.9
(-1)
A 		22.9
(0.1)
P 		22.1
(-0.3)
A 		19.7
(-1.6)
P 		11
B 29.9
(2.1)
P 		16.1
(-3)
A 		28.2
(1.5)
A 		26.1
(0.7)
P 		32.3
(3)
P 		25.7
(0.6)
P 		16
C 27.4
(1.1)
P 		6.6
(-3)
A 		19.6
(-0.4)
P 		20.5
(-0.3)
P 		37.1
(3)
P 		22.9
(0.2)
P 		31
avr 24.8
(0.5) 		17
(-3) 		22.9
(-0.4) 		23.2
(-0.2) 		30.5
(3) 		22.8
(-0.4) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178688_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9185
Sequence Type Exemplar sequence
Representative Public ID K08D8.3 NCBI
Target Description K08D8.3 /REP_DB=WormBase Gene ID /WP=CE21042 /TR=Q21329 /GB=CAA97434.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070059 NCBI Caenorhabditis elegans K08D8.3 (K08D8.3) mRNA, complete cds. 11/11 None
SNAP00000040291 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12903961:12906564:-1 11/11 None
GENEFINDER00000040298 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12904234:12912079:-1 11/11 None
K08D8.3 ENSEMBL cdna:known chromosome:CEL140:IV:12903945:12906594:-1 gene:K08D8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12904171-12906570(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D8.3
Entrez Gene 178242 Entrez gene
SwissProt Q21329 EMBL-EBI
WormBase CE21042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97434 Hypothetical protein K08D8.3 [Caenorhabditis elegans] ref|NP_502460.1| K08D8.3 [Caenorhabditis elegans] 0.0
blast CAA97435 Hypothetical protein K08D8.4a [Caenorhabditis elegans] ref|NP_001023284.1| K08D8.4a [Caenorhabditis elegans] 0.0
blast CAI59116 Hypothetical protein K08D8.4d [Caenorhabditis elegans] ref|NP_001023287.1| K08D8.4d [Caenorhabditis elegans] 0.0
blast CAE56622 Hypothetical protein CBG24378 [Caenorhabditis briggsae] 1.0E-102
blast CAE62339 Hypothetical protein CBG06414 [Caenorhabditis briggsae] 5.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.5E-43
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.5E-47
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.9E-47
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.4E-38
Sequence
Target Sequence 
>C. ELEGANS:178688_S_AT
ggaacttcagtgattgcaacgtctgatagcagaccagagtttataaagagtattgggata
ttccctagtggggccacgttgaagatatacgaaggacgaattggtaatgacagtttggtc
actacgttgacaaaagccaactaccaatctcgtctgcctatggaattgaagaacaccatt
cgccagtacgtcctggactctggatctttgcagattcaactctcgagaagctcagctgat
gcaaattggaatacagtttacaatggaagaaaaggcttcgtacactctttttatcacggg
acaaatagcaatgagcaagacactggtgaaacattatatactgctggctggacagagcaa
ctgtattttaattatgttgtgagggatgccgatttcacgggaaacctgacaactttgacg
gttatgattttgagtaaagggcagcaggtttcgttgacagtatataactccaaaaatctt
ccacctgcgacaactgttagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTTCAGTGATTGCAACGTCTG 126 529 823 Antisense
TACCAATCTCGTCTGCCTATGGAAT 130 651 964 Antisense
TTGAAGAACACCATTCGCCAGTACG 44 701 988 Antisense
GCCAGTACGTCCTGGACTCTGGATC 142 281 1004 Antisense
GATCTTTGCAGATTCAACTCTCGAG 67 421 1025 Antisense
TCAACTCTCGAGAAGCTCAGCTGAT 674 629 1038 Antisense
AAGGCTTCGTACACTCTTTTTATCA 662 143 1094 Antisense
GGGATGCCGATTTCACGGGAAACCT 392 493 1205 Antisense
GTAAAGGGCAGCAGGTTTCGTTGAC 683 223 1256 Antisense
ATAACTCCAAAAATCTTCCACCTGC 698 23 1286 Antisense
CTTCCACCTGCGACAACTGTTAGTG 467 219 1300 Antisense
Sequence Source Affymetrix Proprietary Database