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[178687_at]

Description F15H9.1 /REP_DB=WormBase Gene ID /WP=CE15857 /TR=O45371 /GB=CAB04116.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 23.8
(-3)
A 		97.1
(0.8)
P 		51.6
(-1.6)
A 		139.6
(3)
P 		116
B 44.7
(-1.2)
A 		78.7
(3)
A 		29.6
(-3)
A 		38.7
(-1.9)
A 		49
C 39.5
(-1.9)
A 		17.6
(-3)
A 		40.1
(-1.8)
A 		133.3
(3)
P 		116
avr 36
(-3) 		64.5
(-0.5) 		40.4
(-2.6) 		103.9
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 22
(-3)
A 		23.8
(-2.8)
A 		39.5
(-0.6)
A 		52.7
(1.1)
A 		47.6
(0.5)
P 		66.4
(3)
M 		44
B 33.6
(-3)
A 		40.8
(-1.9)
A 		40.2
(-2)
A 		73.3
(3)
A 		54.6
(0.2)
P 		65.9
(1.9)
P 		40
C 53.6
(-0.5)
A 		59
(0.1)
P 		39.9
(-2.2)
A 		68.1
(1.3)
P 		33.8
(-3)
A 		82.1
(3)
P 		48
avr 36.4
(-3) 		41.2
(-2.2) 		39.9
(-2.4) 		64.7
(1.8) 		45.3
(-1.5) 		71.5
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.7
(-3)
A 		21.1
(3)
P 		13.5
(-0.7)
A 		20.4
(2.7)
P 		12
B 14.3
(0.6)
A 		19.4
(3)
A 		6.9
(-3)
A 		8.3
(-2.3)
A 		13
C 13.1
(-0.2)
A 		5.1
(-3)
A 		14
(0.1)
A 		22.5
(3)
P 		17
avr 12
(-2.5) 		15.2
(1) 		11.5
(-3) 		17.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.1
(-3)
A 		8.5
(-0.8)
A 		8.6
(-0.8)
A 		13.4
(1.6)
A 		14.4
(2.1)
P 		16.2
(3)
M 		12
B 11.7
(-2.2)
A 		13.6
(-1.5)
A 		9.8
(-3)
A 		19.4
(0.9)
A 		22.2
(2)
P 		24.6
(3)
P 		15
C 19.9
(0.4)
A 		18
(-0.3)
P 		10.2
(-3)
A 		13.7
(-1.8)
P 		11
(-2.7)
A 		27.5
(3)
P 		17
avr 11.9
(-1.9) 		13.4
(-1.2) 		9.5
(-3) 		15.5
(-0.3) 		15.9
(-0.1) 		22.8
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178687_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2042
Sequence Type Exemplar sequence
Representative Public ID F15H9.1 NCBI
Target Description F15H9.1 /REP_DB=WormBase Gene ID /WP=CE15857 /TR=O45371 /GB=CAB04116.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060672(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060672 NCBI Caenorhabditis elegans F15H9.1 (F15H9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000007322 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12165273:12166834:1 11/11 None
SNAP00000007310 ENSEMBL cdna:SNAP chromosome:CEL140:I:12165614:12166834:1 11/11 None
F15H9.1 ENSEMBL cdna:known chromosome:CEL140:I:12165273:12166834:1 gene:F15H9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12165203-12166765(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15H9.1
Entrez Gene 184548 Entrez gene
SwissProt O45371 EMBL-EBI
WormBase CE15857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04116 Hypothetical protein F15H9.1 [Caenorhabditis elegans] ref|NP_493073.1| F15H9.1 [Caenorhabditis elegans] 0.0
blast CAB04116 Hypothetical protein F15H9.1 [Caenorhabditis elegans] ref|NP_493073.1| F15H9.1 [Caenorhabditis elegans] 1.0E-140
blast CAB04281 Hypothetical protein F35E2.5 [Caenorhabditis elegans] ref|NP_492992.1| F35E2.5 [Caenorhabditis elegans] 1.0E-22
blast CAE67999 Hypothetical protein CBG13609 [Caenorhabditis briggsae] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 5.0E-84
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 2.0E-57
Sequence
Target Sequence 
>C. ELEGANS:178687_AT
gacaatgatcggcttaggaaccccaaaaaacgtgtggaaaaaacattcattcttcttcaa
cttgaaacggttctctggaagtttttgccattttgctggaatctgcgagaaacgcaaaca
aaaaactactatagcgtccatcaaaacgacgacctcaattccatcaacttctacacttca
aatcaatcatacaactggctcaactgtgaactctacaactaggatgatttcttcgacaat
tccatcaactcccaatttgcaaatcaattctacgactagctcaattcaaaactctacaac
tagtatgatctcttcaacaatttcttcaacttcttccaattcaacatcttcaacaataaa
tgttccgaaaactgctgccccagaagaggagattgaggaagggcccagtgaagagaaaga
tgaaaatgttgatgagaaagatgatatcgagaatgaaacagaagtggataatgatttgta
tgttagcatggattttctggacagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATGATCGGCTTAGGAACCCCA 213 365 735 Antisense
TTGCCATTTTGCTGGAATCTGCGAG 583 701 819 Antisense
AAACTACTATAGCGTCCATCAAAAC 547 127 857 Antisense
TCAAAACGACGACCTCAATTCCATC 638 629 875 Antisense
CCATCAACTTCTACACTTCAAATCA 320 271 895 Antisense
ATCAATCATACAACTGGCTCAACTG 660 25 916 Antisense
GGCTCAACTGTGAACTCTACAACTA 370 539 931 Antisense
AGGATGATTTCTTCGACAATTCCAT 361 57 955 Antisense
ATTCCATCAACTCCCAATTTGCAAA 145 9 973 Antisense
AAACTGCTGCCCCAGAAGAGGAGAT 358 127 1103 Antisense
GTTAGCATGGATTTTCTGGACAGTG 419 445 1216 Antisense
Sequence Source Affymetrix Proprietary Database