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[178684_at] 7TM receptor, sre family

Description F57G9.1 /REP_DB=WormBase Gene ID /WP=CE17917 /TR=O62266 /GB=CAB05749.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 10      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 23.1
(-2.5)
A 		15.1
(-3)
A 		48.8
(-1)
A 		113.9
(3)
P 		99
B 28
(-2.8)
A 		36
(-2.3)
A 		25.8
(-3)
A 		108.1
(3)
P 		82
C 43.6
(-1.6)
A 		71.6
(-0.5)
A 		8
(-3)
A 		161.4
(3)
P 		153
avr 31.6
(-2.8) 		40.9
(-2.2) 		27.5
(-3) 		127.8
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 2.8
(-3)
A 		16.9
(-1.7)
A 		68.3
(3)
A 		21.2
(-1.3)
A 		41.8
(0.6)
A 		51.5
(1.5)
A 		66
B 42.8
(0.1)
A 		6.1
(-3)
A 		22.3
(-1.6)
A 		34.4
(-0.6)
A 		76.4
(3)
P 		59.7
(1.6)
P 		70
C 15.4
(-2.3)
A 		39.8
(-0.7)
A 		4
(-3)
A 		33.7
(-1.1)
A 		63.3
(0.8)
A 		96.6
(3)
P 		93
avr 20.3
(-3) 		20.9
(-2.9) 		31.5
(-1.6) 		29.8
(-1.8) 		60.5
(1.9) 		69.3
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 8.4
(-0.7)
A 		3.3
(-3)
A 		12.8
(1.3)
A 		16.7
(3)
P 		13
B 8.9
(-2)
A 		8.9
(-2)
A 		6
(-3)
A 		23
(3)
P 		17
C 14.4
(-0.1)
A 		20.6
(1.4)
A 		2.8
(-3)
A 		27.2
(3)
P 		24
avr 10.6
(-1.6) 		10.9
(-1.5) 		7.2
(-3) 		22.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 0.5
(-3)
A 		6
(-0.7)
A 		14.9
(3)
A 		5.4
(-1)
A 		12.6
(2)
A 		12.5
(2)
A 		14
B 14.9
(-0.3)
A 		2
(-3)
A 		5.4
(-2.3)
A 		9.1
(-1.5)
A 		31
(3)
P 		22.2
(1.2)
P 		29
C 5.7
(-2.1)
A 		12.1
(-0.9)
A 		1
(-3)
A 		6.8
(-1.9)
A 		20.5
(0.7)
A 		32.3
(3)
P 		31
avr 7
(-2.9) 		6.7
(-3) 		7.1
(-2.8) 		7.1
(-2.8) 		21.4
(2.7) 		22.3
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2669
Sequence Type Exemplar sequence
Representative Public ID F57G9.1 NCBI
Target Description F57G9.1 /REP_DB=WormBase Gene ID /WP=CE17917 /TR=O62266 /GB=CAB05749.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064232 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-31) (sre-31) mRNA, complete cds. 11/11 None
GENEFINDER00000038201 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12399302:12408764:-1 11/11 None
F57G9.1 ENSEMBL cdna:known chromosome:CEL140:II:12406831:12408720:-1 gene:F57G9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038199 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12406827-12408717(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-31
Ensembl F57G9.1
Entrez Gene 186475 Entrez gene
SwissProt O62266 EMBL-EBI
WormBase CE17917 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05749 Hypothetical protein F57G9.1 [Caenorhabditis elegans] ref|NP_496633.1| Serpentine Receptor, class E (epsilon) family member (sre-31) [Caenorhabditis elegans] sp|O62266|SRE31_CAEEL Serpentine receptor class epsilon-31 (Protein sre-31) 0.0
blast CAB05750 Hypothetical protein F57G9.2 [Caenorhabditis elegans] ref|NP_496632.1| Serpentine Receptor, class E (epsilon) family member (sre-30) [Caenorhabditis elegans] sp|O62267|SRE30_CAEEL Serpentine receptor class epsilon-30 (Protein sre-30) 1.0E-136
blast CAB05750 Hypothetical protein F57G9.2 [Caenorhabditis elegans] ref|NP_496632.1| Serpentine Receptor, class E (epsilon) family member (sre-30) [Caenorhabditis elegans] sp|O62267|SRE30_CAEEL Serpentine receptor class epsilon-30 (Protein sre-30) 1.0E-129
blast CAB05752 Hypothetical protein F57G9.4 [Caenorhabditis elegans] ref|NP_496631.1| Serpentine Receptor, class E (epsilon) family member (sre-29) [Caenorhabditis elegans] sp|O62269|SRE29_CAEEL Serpentine receptor class epsilon-29 (Protein sre-29) 1.0E-105
blast CAB05752 Hypothetical protein F57G9.4 [Caenorhabditis elegans] ref|NP_496631.1| Serpentine Receptor, class E (epsilon) family member (sre-29) [Caenorhabditis elegans] sp|O62269|SRE29_CAEEL Serpentine receptor class epsilon-29 (Protein sre-29) 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496633.1 7 27-49,61-83,121-143,163-185,190-212,253-272,287-304
F57G9.1 7 27-49,61-83,121-143,163-185,190-212,253-272,287-304
GENEFINDER00000038201 13 5-27,42-64,76-98,136-158,178-200,205-227,268-287,302-319,389-411,449-471,491-513,517-539,581-603
Sequence
Target Sequence 
>C. ELEGANS:178684_AT
tgataaaccggaaagttcaccccattatcgcccgtttgccatttatatttttgtgcccaa
tttcttttgcggtatggcttttcgtgaagaacaagaacaaaactcttcaaaaagagattc
aaaatcccaagagaactcgaattttcacactttcacagcagtgccaagtcaaggagaatt
tgcgagcattaaggctcggaacacgcttggtggctgtggtgctggtttatattatggtgt
gctttttgggtatagtttcactaacttttgacctgattcctggagtttgtgggcattttg
tggagaattttttgtttttccaccccataccaatctgcctaactgcaatgttcagcatac
cccgttggaaaactgaatttgaaaaaagttacctgccttggaaatatcgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATAAACCGGAAAGTTCACCCCAT 680 545 563 Antisense
ATCGCCCGTTTGCCATTTATATTTT 683 37 589 Antisense
TTTTGTGCCCAATTTCTTTTGCGGT 276 673 611 Antisense
TCTTTTGCGGTATGGCTTTTCGTGA 205 615 625 Antisense
CACACTTTCACAGCAGTGCCAAGTC 557 193 708 Antisense
CTCGGAACACGCTTGGTGGCTGTGG 442 231 757 Antisense
CACTAACTTTTGACCTGATTCCTGG 46 197 821 Antisense
GATTCCTGGAGTTTGTGGGCATTTT 312 433 837 Antisense
CCCATACCAATCTGCCTAACTGCAA 444 257 886 Antisense
ATGTTCAGCATACCCCGTTGGAAAA 114 47 910 Antisense
GTTACCTGCCTTGGAAATATCGACG 181 445 950 Antisense
Sequence Source Affymetrix Proprietary Database