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[178683_at]

Description T21B6.5 /REP_DB=WormBase Gene ID /WP=CE23995 /TR=Q9TVS9 /GB=CAB60293.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 74.6
(-2)
A 		71
(-3)
A 		75
(-1.9)
P 		92.7
(3)
P 		22
B 37.9
(-1.6)
A 		79.6
(3)
A 		61.8
(1.1)
P 		24.8
(-3)
A 		55
C 27
(-3)
A 		45.8
(-0.8)
A 		56.2
(0.3)
P 		79.3
(3)
A 		52
avr 46.5
(-3) 		65.5
(3) 		64.3
(2.6) 		65.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 86.3
(0.8)
A 		66.2
(-1.2)
A 		108.5
(3)
P 		85.8
(0.7)
P 		67.5
(-1.1)
P 		48.3
(-3)
A 		60
B 77.6
(0.1)
M 		70.6
(-1)
P 		62.5
(-2.2)
P 		97.3
(3)
P 		57.2
(-3)
P 		59.8
(-2.6)
A 		40
C 61.9
(1.1)
A 		78.9
(2.9)
P 		59.8
(0.8)
A 		79.6
(3)
P 		60
(0.8)
P 		25
(-3)
A 		55
avr 75.3
(1.3) 		71.9
(0.8) 		76.9
(1.5) 		87.6
(3) 		61.6
(-0.6) 		44.4
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 27.2
(3)
A 		15.4
(-2.2)
A 		19.6
(-0.4)
P 		13.6
(-3)
P 		14
B 12.1
(-0.2)
A 		19.7
(3)
A 		14.3
(0.8)
P 		5.3
(-3)
A 		14
C 8.9
(-3)
A 		13.2
(-0.6)
A 		19.6
(3)
P 		13.4
(-0.5)
A 		11
avr 16.1
(1.5) 		16.1
(1.5) 		17.8
(3) 		10.8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 15.9
(-0.9)
A 		23.5
(2.9)
A 		23.6
(3)
P 		21.7
(2)
P 		20.4
(1.4)
P 		11.8
(-3)
A 		12
B 27
(3)
M 		23.5
(1.2)
P 		15.2
(-3)
P 		25.8
(2.4)
P 		23.2
(1.1)
P 		22.3
(0.6)
A 		12
C 22.9
(2.5)
A 		24.1
(3)
P 		15.2
(-0.4)
A 		16
(-0.1)
P 		19.4
(1.2)
P 		8.4
(-3)
A 		16
avr 21.9
(1.9) 		23.7
(3) 		18
(-0.6) 		21.2
(1.4) 		21
(1.3) 		14.2
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16963
Sequence Type Exemplar sequence
Representative Public ID T21B6.5 NCBI
Target Description T21B6.5 /REP_DB=WormBase Gene ID /WP=CE23995 /TR=Q9TVS9 /GB=CAB60293.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077424 NCBI Caenorhabditis elegans T21B6.5 (T21B6.5) mRNA, complete cds. 11/11 None
T21B6.5 ENSEMBL cdna:known chromosome:CEL140:X:10917277:10919936:-1 gene:T21B6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10917276-10919936(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21B6.5
Entrez Gene 188685 Entrez gene
SwissProt Q9TVS9 EMBL-EBI
WormBase CE23995 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60293 Hypothetical protein T21B6.5 [Caenorhabditis elegans] emb|CAB60291.1| Hypothetical protein T21B6.5 [Caenorhabditis elegans] ref|NP_509825.1| T21B6.5 [Caenorhabditis elegans] 0.0
blast CAA94748 Hypothetical protein C50F4.14 [Caenorhabditis elegans] ref|NP_505467.2| C50F4.14 [Caenorhabditis elegans] gb|AAK50396.1| GDP-fucose transporter [Caenorhabditis elegans] sp|Q968A5|FUCT1_CAEEL GDP-fucose transporter 1.0E-73
blast T20120 hypothetical protein C50F4.14 - Caenorhabditis elegans 1.0E-73
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509825.1 8 13-32,60-82,95-116,126-148,155-169,179-201,241-263,273-295
T21B6.5 8 13-32,60-82,95-116,126-148,155-169,179-201,241-263,273-295
Sequence
Target Sequence 
>C. ELEGANS:178683_AT
gatcaattacaaccgtctttactgtgatattgacgtatgtattttttggagataactcaa
caaaaggcgtgaatgtctcttgtttggttatattaattggttttgggataggatcggatc
aagagtctcaagatccattaactacaagtggggttctttacggaatgttcgcttctttgg
cagttgctttgaacgctttatacacaaaatcaaatactatggtacttgttcaaaagttta
ataaacaactttctcaaacaataaagccaaataagtatttttctcacagaattctgccaa
aagttggtaactgtatctggcaattgacatggtacaataatattctagcagtgctacttt
tccttcctctaattatcattaatggagattttggcaaaatttggaatcatttcccaactt
ggtcattttggcaattgctatttatatcaggaatatttgggtttgtaatgaattatgtta
caggatggcaaattaaagcaacatctcctcttacacataacatctcggcaaccgcaaaat
ctgcatcccagaccgtcatagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAATTACAACCGTCTTTACTGT 211 421 410 Antisense
GCGTGAATGTCTCTTGTTTGGTTAT 486 291 476 Antisense
GGTTCTTTACGGAATGTTCGCTTCT 530 505 561 Antisense
TTCGCTTCTTTGGCAGTTGCTTTGA 223 697 577 Antisense
TTCTAGCAGTGCTACTTTTCCTTCC 466 691 752 Antisense
CTTTTCCTTCCTCTAATTATCATTA 133 221 766 Antisense
TGGAATCATTTCCCAACTTGGTCAT 152 547 811 Antisense
TAAAGCAACATCTCCTCTTACACAT 601 639 903 Antisense
TCTTACACATAACATCTCGGCAACC 540 615 918 Antisense
TCGGCAACCGCAAAATCTGCATCCC 252 607 934 Antisense
TCTGCATCCCAGACCGTCATAGCAG 348 609 949 Antisense
Sequence Source Affymetrix Proprietary Database