[Home] | [Total List]

[178681_at]

Description C38D9.3 /REP_DB=WormBase Gene ID /WP=CE19729 /TR=Q9XVC3 /GB=CAB03949.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 35      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 7.5
(-3)
A 		25.5
(-0.2)
A 		8.7
(-2.8)
A 		45.4
(3)
A 		38
B 32.7
(3)
A 		31.4
(2.7)
A 		7.5
(-2)
A 		2.4
(-3)
A 		30
C 7.3
(-2.7)
A 		10.4
(0)
A 		13.8
(3)
A 		7
(-3)
A 		7
avr 15.8
(-0.2) 		22.4
(3) 		10
(-3) 		18.3
(1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 54.2
(3)
A 		4.3
(-2.8)
A 		3.3
(-3)
A 		2.9
(-3)
A 		25.7
(-0.3)
A 		3.2
(-3)
A 		51
B 9.7
(-0.3)
A 		20
(3)
A 		10.9
(0)
A 		3.6
(-2.3)
A 		8.5
(-0.7)
A 		1.5
(-3)
A 		19
C 2.8
(-3)
A 		5.1
(-2.3)
A 		13.7
(0.1)
A 		14.9
(0.5)
A 		4.9
(-2.4)
A 		23.6
(3)
A 		21
avr 22.2
(3) 		9.8
(-1.9) 		9.3
(-2.1) 		7.1
(-3) 		13
(-0.7) 		9.4
(-2.1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.7
(-2.5)
A 		5.5
(1.4)
A 		2.3
(-3)
A 		6.7
(3)
A 		4
B 10.4
(3)
A 		7.8
(1.4)
A 		1.7
(-2.3)
A 		0.5
(-3)
A 		10
C 2.4
(-1)
A 		3
(0)
A 		4.8
(3)
A 		1.2
(-3)
A 		4
avr 5.2
(2.5) 		5.4
(3) 		2.9
(-2.8) 		2.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 10
(3)
A 		1.5
(-2.5)
A 		0.7
(-3)
A 		0.7
(-3)
A 		7.7
(1.5)
A 		0.8
(-2.9)
A 		9
B 3.4
(-0.2)
A 		6.7
(3)
A 		2.6
(-1)
A 		1
(-2.6)
A 		3.4
(-0.2)
A 		0.6
(-3)
A 		6
C 1
(-3)
A 		1.5
(-2.6)
A 		3.5
(-0.8)
A 		3
(-1.3)
A 		1.6
(-2.5)
A 		7.9
(3)
A 		7
avr 4.8
(3) 		3.2
(0) 		2.3
(-1.7) 		1.6
(-3) 		4.2
(1.9) 		3.1
(-0.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178681_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14210
Sequence Type Exemplar sequence
Representative Public ID C38D9.3 NCBI
Target Description C38D9.3 /REP_DB=WormBase Gene ID /WP=CE19729 /TR=Q9XVC3 /GB=CAB03949.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075050 NCBI Caenorhabditis elegans C38D9.3 (C38D9.3) mRNA, complete cds. 11/11 None
SNAP00000039593 ENSEMBL cdna:SNAP chromosome:CEL140:V:17581541:17583367:1 11/11 None
C38D9.3 ENSEMBL cdna:known chromosome:CEL140:V:17578777:17583367:1 gene:C38D9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032510 1/11 Cross Hyb Matching Probes None
SNAP00000032504 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17578776-17583367(+) 94.26 100.0
Public Domain and Genome References
Gene Title
Ensembl C38D9.3
Entrez Gene 183314 Entrez gene
SwissProt Q9XVC3 EMBL-EBI
WormBase CE19729 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03949 Hypothetical protein C38D9.3 [Caenorhabditis elegans] ref|NP_507451.1| C38D9.3 [Caenorhabditis elegans] 0.0
blast CAB02490 Hypothetical protein F15D4.7 [Caenorhabditis elegans] emb|CAB60425.1| Hypothetical protein F15D4.7 [Caenorhabditis elegans] ref|NP_496808.1| F15D4.7 [Caenorhabditis elegans] 0.0
blast AAB00611 Hypothetical protein R09H3.1 [Caenorhabditis elegans] ref|NP_508305.1| R09H3.1 [Caenorhabditis elegans] 1.0E-116
blast CAB02490 Hypothetical protein F15D4.7 [Caenorhabditis elegans] emb|CAB60425.1| Hypothetical protein F15D4.7 [Caenorhabditis elegans] ref|NP_496808.1| F15D4.7 [Caenorhabditis elegans] 1.0E-110
blast AAB00611 Hypothetical protein R09H3.1 [Caenorhabditis elegans] ref|NP_508305.1| R09H3.1 [Caenorhabditis elegans] 2.0E-60
Sequence
Target Sequence 
>C. ELEGANS:178681_AT
ggagagagggacttatctactcatcccactcgaagtacaccacatggacaaggacaacga
cttggacacctccgcaccgacgcaacccaccgaagaagaagacgacctggactacaagtc
ctctccacccccattaccaccaacactcgctctaactcaacttccgagcaaaattgctcc
gaacagctcaaaaagagcggctcacgtagccaaaaaatctaacgacaccaataccaaaca
tttgtctagagataaaaatgtaacaagagataccatccagaatcagacagaagtcgatga
tcattacgtagtatacaaagatccagctgtaccagaaccaaacctattacatgattgctc
ccacagaagttacccagggactcaaggaacatcagataataatttgcaaaatgcaactgg
tgagactctttgtactcctttcactcatccaaattcgtctgaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAGAGGGACTTATCTACTCATC 156 517 3984 Antisense
CAAAATTGCTCCGAACAGCTCAAAA 482 189 4152 Antisense
CTAACGACACCAATACCAAACATTT 433 209 4202 Antisense
AGAGATACCATCCAGAATCAGACAG 319 69 4249 Antisense
GATCCAGCTGTACCAGAACCAAACC 687 415 4303 Antisense
AAACCTATTACATGATTGCTCCCAC 394 123 4323 Antisense
TTGCTCCCACAGAAGTTACCCAGGG 78 701 4338 Antisense
TTACCCAGGGACTCAAGGAACATCA 547 679 4353 Antisense
GCAAAATGCAACTGGTGAGACTCTT 407 317 4389 Antisense
GTGAGACTCTTTGTACTCCTTTCAC 388 483 4403 Antisense
CACTCATCCAAATTCGTCTGAACCC 106 197 4425 Antisense
Sequence Source Affymetrix Proprietary Database