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[178680_at]

Description M04C9.4 /REP_DB=WormBase Gene ID /WP=CE12406 /TR=P90934 /GB=CAB06023.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 48      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 8.6
(-3)
A 		132.5
(3)
A 		102.8
(1.6)
A 		15.3
(-2.7)
A 		124
B 53.9
(-2.5)
A 		108.1
(2.3)
A 		115.4
(3)
A 		48.6
(-3)
A 		67
C 11.7
(-3)
A 		41.1
(-1.1)
A 		105.2
(3)
A 		52.5
(-0.4)
A 		94
avr 24.7
(-3) 		93.9
(2) 		107.8
(3) 		38.8
(-2) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 13.2
(-3)
A 		33.1
(-1.2)
A 		71.7
(2.3)
A 		76.3
(2.7)
A 		80
(3)
A 		65.9
(1.7)
A 		67
B 66.3
(-1.4)
A 		62
(-1.8)
A 		105.7
(2.3)
A 		113.8
(3)
A 		74.4
(-0.6)
A 		48.8
(-3)
A 		65
C 36
(-1.4)
A 		90.6
(2.9)
A 		15.7
(-3)
A 		91.9
(3)
A 		62.3
(0.7)
A 		67.7
(1.1)
A 		76
avr 38.5
(-3) 		61.9
(-0.5) 		64.4
(-0.2) 		94
(3) 		72.2
(0.6) 		60.8
(-0.6) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 3.1
(-2.8)
A 		28.8
(3)
A 		26.9
(2.6)
A 		2.2
(-3)
A 		27
B 17.2
(-0.5)
A 		26.7
(3)
A 		26.8
(3)
A 		10.4
(-3)
A 		16
C 3.9
(-3)
A 		11.8
(-1.6)
A 		36.7
(3)
A 		8.9
(-2.1)
A 		33
avr 8.1
(-2.8) 		22.4
(1) 		30.1
(3) 		7.2
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 2.4
(-3)
A 		11.8
(-0.4)
A 		15.6
(0.6)
A 		19.3
(1.7)
A 		24.1
(3)
A 		16
(0.8)
A 		22
B 23.1
(-0.5)
A 		20.6
(-1.8)
A 		25.7
(0.8)
A 		30.1
(3)
A 		30.2
(3)
A 		18.2
(-3)
A 		12
C 13.3
(-0.6)
A 		27.7
(3)
A 		4
(-3)
A 		18.5
(0.7)
A 		20.2
(1.1)
A 		22.7
(1.7)
A 		24
avr 12.9
(-3) 		20
(0.6) 		15.1
(-1.9) 		22.6
(1.9) 		24.8
(3) 		19
(0.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2228
Sequence Type Exemplar sequence
Representative Public ID M04C9.4 NCBI
Target Description M04C9.4 /REP_DB=WormBase Gene ID /WP=CE12406 /TR=P90934 /GB=CAB06023.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060091 NCBI Caenorhabditis elegans M04C9.4 (M04C9.4) mRNA, complete cds. 11/11 None
SNAP00000035488 ENSEMBL cdna:SNAP chromosome:CEL140:I:9363292:9365202:-1 11/11 None
GENEFINDER00000035496 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9363292:9365202:-1 11/11 None
M04C9.4 ENSEMBL cdna:known chromosome:CEL140:I:9363292:9365202:-1 gene:M04C9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9363222-9365133(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M04C9.4
Entrez Gene 187441 Entrez gene
SwissProt P90934 EMBL-EBI
WormBase CE36656 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB06023 Hypothetical protein M04C9.4 [Caenorhabditis elegans] ref|NP_492492.2| M04C9.4 [Caenorhabditis elegans] 0.0
blast CAB04432 Hypothetical protein F49C5.3 [Caenorhabditis elegans] ref|NP_496678.2| F49C5.3 [Caenorhabditis elegans] 5.0E-52
blast CAA19532 Hypothetical protein Y48A6B.8 [Caenorhabditis elegans] ref|NP_499419.1| Y48A6B.8 [Caenorhabditis elegans] 7.0E-51
Sequence
Target Sequence 
>C. ELEGANS:178680_AT
tcaagatttggctgttcacctaccgcccgtcgtctgcctacaactttgataagcactttg
tggaatacccagcatcagttatcgacacaatttttggtagaaaactggatgcgttttcaa
tggaagttctcggtgtctatctccctgaagatcttctcgtaggaggttgctacaatgttt
cagatgcatcagaaacatttctacaatcgctgggagaaaatgcaagcaaagaagtggaac
gacgtagaaaattccgtggaccggccagaaaaacttgtatcggagctatggcagcagcta
tgaaaagtctccgccaacatcactacaacgccgctcgtgacactgtatcgtattgttcag
ctcgttcagattgcaaggagcacttgacatggcaccagttgagattctacagggcacata
gtggaaagaccaaagaagagtgtgacttggcacgtccggatgatgtcatggctttttgcc
gggaacgtgcgatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGATTTGGCTGTTCACCTACCG 214 631 845 Antisense
GGAATACCCAGCATCAGTTATCGAC 633 533 906 Antisense
AATGGAAGTTCTCGGTGTCTATCTC 26 163 963 Antisense
GAAACATTTCTACAATCGCTGGGAG 171 357 1036 Antisense
GCAGCTATGAAAAGTCTCCGCCAAC 613 313 1138 Antisense
CCGCTCGTGACACTGTATCGTATTG 358 263 1175 Antisense
GTATCGTATTGTTCAGCTCGTTCAG 292 455 1189 Antisense
AAGGAGCACTTGACATGGCACCAGT 328 161 1219 Antisense
GGCACCAGTTGAGATTCTACAGGGC 403 535 1235 Antisense
ACTTGGCACGTCCGGATGATGTCAT 526 101 1289 Antisense
GCTTTTTGCCGGGAACGTGCGATGC 36 303 1315 Antisense
Sequence Source Affymetrix Proprietary Database