[Home] | [Total List]

[178679_at]

Description C47B2.1 /REP_DB=WormBase Gene ID /WP=CE17561 /TR=O62104 /GB=CAB16858.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 23.1
(-2.3)
A 		6.5
(-3)
A 		27.7
(-2.1)
A 		150.8
(3)
P 		144
B 29.3
(-1.7)
A 		40.6
(-1.1)
A 		7.1
(-3)
A 		110.3
(3)
P 		103
C 45.5
(-2.2)
A 		30
(-2.8)
A 		25.9
(-3)
A 		182
(3)
P 		156
avr 32.6
(-2.4) 		25.7
(-2.7) 		20.2
(-3) 		147.7
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 11.4
(-3)
A 		49.7
(1.4)
M 		40.6
(0.4)
P 		63.1
(3)
P 		46.4
(1.1)
P 		51.8
(1.7)
P 		52
B 5.8
(-3)
A 		34.3
(-0.1)
P 		34.5
(-0.1)
A 		37.2
(0.2)
A 		51.4
(1.7)
P 		64.2
(3)
P 		58
C 36.1
(-2.6)
A 		65
(3)
P 		41.5
(-1.5)
A 		35.7
(-2.7)
A 		33.9
(-3)
A 		55
(1.1)
P 		31
avr 17.8
(-3) 		49.7
(1.9) 		38.9
(0.2) 		45.3
(1.2) 		43.9
(1) 		57
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 8.4
(-1)
A 		1.4
(-3)
A 		7.2
(-1.3)
A 		22.1
(3)
P 		21
B 9.3
(-0.9)
A 		10
(-0.7)
A 		1.6
(-3)
A 		23.5
(3)
P 		22
C 15.1
(-1.2)
A 		8.6
(-3)
A 		9
(-2.9)
A 		30.7
(3)
P 		22
avr 10.9
(-1.5) 		6.7
(-2.8) 		5.9
(-3) 		25.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.1
(-3)
A 		17.7
(3)
M 		8.9
(-0.4)
P 		16
(2.3)
P 		14
(1.6)
P 		12.6
(1)
P 		16
B 2
(-3)
A 		11.4
(-0.4)
P 		8.4
(-1.2)
A 		9.9
(-0.8)
A 		20.9
(2.2)
P 		23.9
(3)
P 		22
C 13.4
(-0)
A 		19.8
(3)
P 		10.6
(-1.4)
A 		7.2
(-3)
A 		11
(-1.2)
A 		18.4
(2.3)
P 		13
avr 5.8
(-3) 		16.3
(2) 		9.3
(-1.3) 		11
(-0.5) 		15.3
(1.6) 		18.3
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1605
Sequence Type Exemplar sequence
Representative Public ID C47B2.1 NCBI
Target Description C47B2.1 /REP_DB=WormBase Gene ID /WP=CE17561 /TR=O62104 /GB=CAB16858.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060866 NCBI Caenorhabditis elegans C47B2.1 (C47B2.1) mRNA, complete cds. 11/11 None
SNAP00000041226 ENSEMBL cdna:SNAP chromosome:CEL140:I:12968492:12969581:-1 11/11 None
GENEFINDER00000041244 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12968492:12972690:-1 11/11 None
C47B2.1 ENSEMBL cdna:known chromosome:CEL140:I:12968492:12970540:-1 gene:C47B2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12968422-12970442(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47B2.1
Entrez Gene 173166 Entrez gene
SwissProt O62104 EMBL-EBI
WormBase CE17561 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16858 Hypothetical protein C47B2.1 [Caenorhabditis elegans] ref|NP_493267.1| C47B2.1 [Caenorhabditis elegans] 0.0
blast CAB16858 Hypothetical protein C47B2.1 [Caenorhabditis elegans] ref|NP_493267.1| C47B2.1 [Caenorhabditis elegans] 1.0E-153
blast CAB54198 Hypothetical protein C47B2.2b [Caenorhabditis elegans] ref|NP_493268.1| C47B2.2b [Caenorhabditis elegans] 1.0E-128
blast CAE63473 Hypothetical protein CBG07940 [Caenorhabditis briggsae] 1.0E-117
blast CAB82211 Hypothetical protein F08A8.7 [Caenorhabditis elegans] emb|CAB76414.1| Hypothetical protein F08A8.7 [Caenorhabditis elegans] ref|NP_493266.1| F08A8.7 [Caenorhabditis elegans] 1.0E-67
blast CAB82211 Hypothetical protein F08A8.7 [Caenorhabditis elegans] emb|CAB76414.1| Hypothetical protein F08A8.7 [Caenorhabditis elegans] ref|NP_493266.1| F08A8.7 [Caenorhabditis elegans] 3.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.7E-19
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.9E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.7E-19
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.5E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.7E-19
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.8E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493267.1 1 13-35
C47B2.1 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:178679_AT
gagagtttcactgtttccaagcgaaatcagtttctctgagtggactaaaggaacctcgaa
ctgtgctcattctcaaatctttcaagtctggaactctcgagaacattgaaatcattaatt
cctacaagttctacttcagttggcagctgacgctttcggagcagtggaagaatgcgaaaa
aactgaaaactggactttccactgatcgctacaccggaattcgagttgctgaactgttcg
cattttcaaatatcgaattcacaactgtagtattgtcatctgatttgaaagtgttggttg
attcgtctgcaaagctggaaacttgtctcagcaggaacacgtatgacagcgaggatgaca
gcgatgaagatagtgatgaagacagcgatgatgaggacaatagtggagtgttaacggtgt
caaaagaagtgctcaaagtgttcgatccgaactttgttggctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGTTTCACTGTTTCCAAGCGAA 249 393 926 Antisense
TAAAGGAACCTCGAACTGTGCTCAT 350 641 971 Antisense
GCTCATTCTCAAATCTTTCAAGTCT 401 301 990 Antisense
ACAAGTTCTACTTCAGTTGGCAGCT 268 113 1049 Antisense
CAGCTGACGCTTTCGGAGCAGTGGA 696 203 1069 Antisense
AAACTGGACTTTCCACTGATCGCTA 573 127 1112 Antisense
GCTACACCGGAATTCGAGTTGCTGA 11 295 1133 Antisense
GAGTTGCTGAACTGTTCGCATTTTC 621 397 1148 Antisense
GTGTTGGTTGATTCGTCTGCAAAGC 693 483 1216 Antisense
GAAACTTGTCTCAGCAGGAACACGT 74 357 1243 Antisense
GTTCGATCCGAACTTTGTTGGCTAT 241 441 1365 Antisense
Sequence Source Affymetrix Proprietary Database