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[178678_at]

Description K04H8.3 /REP_DB=WormBase Gene ID /WP=CE11760 /TR=O01338 /GB=CAB04565.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 15      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 29.3
(3)
A 		4.6
(-3)
A 		6.2
(-2.6)
A 		5.9
(-2.7)
A 		25
B 15.1
(3)
A 		5.3
(-1.7)
A 		4.2
(-2.3)
A 		2.7
(-3)
A 		12
C 4.6
(-3)
A 		5.8
(-2.8)
A 		12.6
(-1.8)
A 		45.3
(3)
A 		41
avr 16.3
(2.2) 		5.2
(-3) 		7.7
(-1.8) 		18
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.3
(3)
A 		11.7
(2)
A 		5
(-2)
A 		3.4
(-3)
A 		6.1
(-1.4)
A 		5.9
(-1.5)
A 		10
B 8.9
(-1.6)
A 		7.6
(-2)
A 		8.6
(-1.7)
A 		7.1
(-2.2)
A 		4.5
(-3)
A 		23.7
(3)
A 		19
C 7.3
(-1.7)
A 		4.3
(-3)
A 		4.2
(-3)
A 		5.7
(-2.4)
A 		8.2
(-1.3)
A 		18.3
(3)
A 		14
avr 9.8
(-0.5) 		7.9
(-1.6) 		5.9
(-2.7) 		5.4
(-3) 		6.3
(-2.5) 		16
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.7
(3)
A 		1
(-2.9)
A 		1.6
(-2.6)
A 		0.9
(-3)
A 		10
B 4.8
(3)
A 		1.3
(-2)
A 		1
(-2.4)
A 		0.6
(-3)
A 		4
C 1.5
(-3)
A 		1.7
(-2.8)
A 		4.4
(-0.1)
A 		7.6
(3)
A 		6
avr 5.7
(3) 		1.3
(-3) 		2.3
(-1.6) 		3
(-0.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.4
(-0.3)
A 		4.2
(3)
A 		1.1
(-2.6)
A 		0.9
(-3)
A 		1.8
(-1.4)
A 		1.4
(-2.1)
A 		3
B 3.1
(-1.9)
A 		2.5
(-2.4)
A 		2.1
(-2.7)
A 		1.9
(-2.9)
A 		1.8
(-3)
A 		8.8
(3)
A 		7
C 2.7
(-1.1)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		1.1
(-3)
A 		2.6
(-1.2)
A 		6.1
(3)
A 		5
avr 2.7
(-1) 		2.7
(-1) 		1.4
(-2.9) 		1.3
(-3) 		2.1
(-1.8) 		5.4
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1203
Sequence Type Exemplar sequence
Representative Public ID K04H8.3 NCBI
Target Description K04H8.3 /REP_DB=WormBase Gene ID /WP=CE11760 /TR=O01338 /GB=CAB04565.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061090 NCBI Caenorhabditis elegans K04H8.3 (K04H8.3) mRNA, complete cds. 11/11 None
SNAP00000032442 ENSEMBL cdna:SNAP chromosome:CEL140:I:14263802:14264894:1 10/11 None
GENEFINDER00000032443 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14263802:14265088:1 11/11 None
K04H8.3 ENSEMBL cdna:known chromosome:CEL140:I:14263802:14265088:1 gene:K04H8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14263732-14265019(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04H8.3
Entrez Gene 187016 Entrez gene
SwissProt O01338 EMBL-EBI
WormBase CE11760 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04565 Hypothetical protein K04H8.3 [Caenorhabditis elegans] ref|NP_493491.1| K04H8.3 [Caenorhabditis elegans] 1.0E-116
blast CAB04565 Hypothetical protein K04H8.3 [Caenorhabditis elegans] ref|NP_493491.1| K04H8.3 [Caenorhabditis elegans] 1.0E-100
blast CAE71784 Hypothetical protein CBG18787 [Caenorhabditis briggsae] 7.0E-63
blast CAE71784 Hypothetical protein CBG18787 [Caenorhabditis briggsae] 9.0E-55
Sequence
Target Sequence 
>C. ELEGANS:178678_AT
tcttctcctatgttttactattccaatcgtggctcaggatcctgtccaggacgcccttat
ctcagcagacaccaactccactgctcctgttaactcagacgcccagccggtgccaccaag
ccagatggatagtgtggccgccaaagggcagatcattgctcatgacgtcactggggaagt
ggtgccgatgagggcgatttcaaaggcgtcagccgcagagccatcattgggattgcatgg
gatcaccgagcagcagttgaacttgagatattataattttatctgctcgtcgcattttca
tttggattgtaagctcaccgagaccctccaaatttgcatgacagaccgctacgtcgccgt
gctcgggctcccgctggcctttgacaccgactcccaggacctgacgtttttgacgaagtg
gatgagacaatgcgatcagaatgatcaggatcaaaatcaggaggcgatgaggctgatcag
gaaacggatccactttcagaatgagaataattgggaaggagtcttcaaatcggcctctgg
aattggctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTCCTATGTTTTACTATTCCA 100 617 84 Antisense
AATCGTGGCTCAGGATCCTGTCCAG 318 169 108 Antisense
TCATTGCTCATGACGTCACTGGGGA 496 619 236 Antisense
GGGCGATTTCAAAGGCGTCAGCCGC 74 489 275 Antisense
TCAGCCGCAGAGCCATCATTGGGAT 702 623 292 Antisense
GATTGCATGGGATCACCGAGCAGCA 79 433 314 Antisense
TGGATTGTAAGCTCACCGAGACCCT 549 507 386 Antisense
CGAGACCCTCCAAATTTGCATGACA 546 249 402 Antisense
TTTGCATGACAGACCGCTACGTCGC 148 669 416 Antisense
TCCCAGGACCTGACGTTTTTGACGA 370 597 475 Antisense
CAAATCGGCCTCTGGAATTGGCTCC 203 193 609 Antisense
Sequence Source Affymetrix Proprietary Database