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[178677_at]

Description R07B7.7 /REP_DB=WormBase Gene ID /WP=CE06269 /TR=Q21797 /GB=CAB00116.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 2.4
(-3)
A 		7.7
(-1.6)
A 		12.4
(-0.4)
A 		25.1
(3)
A 		23
B 1.2
(-3)
A 		4.8
(0.7)
A 		4.2
(0.1)
A 		7.1
(3)
A 		6
C 4.1
(-2.8)
A 		4.4
(-2.8)
A 		2.9
(-3)
A 		46.9
(3)
A 		44
avr 2.6
(-3) 		5.6
(-2.2) 		6.5
(-2) 		26.4
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4
(-2.9)
A 		3.7
(-3)
A 		18.9
(3)
A 		4.2
(-2.8)
A 		6.6
(-1.9)
A 		6.4
(-1.9)
A 		15
B 4.5
(3)
A 		1.8
(-2.4)
A 		3.1
(0.2)
A 		4.3
(2.6)
A 		1.5
(-3)
A 		3.3
(0.6)
A 		3
C 4.9
(0.2)
A 		3.8
(-1)
A 		5.2
(0.5)
A 		7.5
(3)
A 		2
(-3)
A 		4.7
(-0.1)
A 		6
avr 4.5
(-1.6) 		3.1
(-3) 		9.1
(3) 		5.3
(-0.8) 		3.4
(-2.7) 		4.8
(-1.3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-3)
A 		1.7
(-1.3)
A 		3.3
(2.1)
A 		3.7
(3)
A 		3
B 0.4
(-3)
A 		1.2
(1.4)
A 		1
(0.3)
A 		1.5
(3)
A 		1
C 1.4
(-2.7)
A 		1.3
(-2.7)
A 		1
(-3)
A 		7.9
(3)
A 		7
avr 0.9
(-3) 		1.4
(-2.1) 		1.8
(-1.5) 		4.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.3
(-1.9)
A 		4.1
(3)
A 		1.1
(-2.3)
A 		2
(-0.7)
A 		1.6
(-1.4)
A 		3
B 1.6
(3)
A 		0.6
(-3)
A 		0.8
(-1.8)
A 		1.1
(0)
A 		0.6
(-3)
A 		1.2
(0.6)
A 		1
C 1.8
(3)
A 		1.1
(-0.5)
A 		1.3
(0.5)
A 		1.5
(1.5)
A 		0.6
(-3)
A 		1.6
(2)
A 		1
avr 1.4
(-0.8) 		1
(-3) 		2.1
(3) 		1.2
(-1.9) 		1.1
(-2.5) 		1.5
(-0.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178677_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14375
Sequence Type Exemplar sequence
Representative Public ID R07B7.7 NCBI
Target Description R07B7.7 /REP_DB=WormBase Gene ID /WP=CE06269 /TR=Q21797 /GB=CAB00116.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073625 NCBI Caenorhabditis elegans R07B7.7 (R07B7.7) mRNA, complete cds. 11/11 None
R07B7.7 ENSEMBL cdna:known chromosome:CEL140:V:12075082:12075482:1 gene:R07B7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027087 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12075081-12075482(+) 44.44 100.0
Public Domain and Genome References
Gene Title
Ensembl R07B7.7
Entrez Gene 187656 Entrez gene
SwissProt Q21797 EMBL-EBI
WormBase CE06269 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00116 Hypothetical protein R07B7.7 [Caenorhabditis elegans] ref|NP_506026.1| R07B7.7 [Caenorhabditis elegans] 8.0E-60
Sequence
Target Sequence 
>C. ELEGANS:178677_AT
gtggtgattatcgtggagcacccacgtttcatctccagtgccggtccagcggtgaagggt
gacacgggtcagatcatgaagtacgaaaagaccaaggagtttcctcataccaagaagttt
aaagccatttgctatggagctatgatgcatcccaaacgtgcttgcaagctcacagagcag
cccacaatgacaaaacaaaaaaggaaaaatacttttttgacagcctactatagagcaaag
gaaatatgtatgatatatagccatatttttatcaacaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTGATTATCGTGGAGCACCCAC 291 489 19 Antisense
TCGTGGAGCACCCACGTTTCATCTC 512 605 29 Antisense
GTGCCGGTCCAGCGGTGAAGGGTGA 108 471 56 Antisense
GACACGGGTCAGATCATGAAGTACG 112 367 79 Antisense
GACCAAGGAGTTTCCTCATACCAAG 666 383 108 Antisense
GCTATGGAGCTATGATGCATCCCAA 589 303 149 Antisense
ATGCATCCCAAACGTGCTTGCAAGC 568 43 163 Antisense
GCTTGCAAGCTCACAGAGCAGCCCA 370 307 178 Antisense
AGAGCAGCCCACAATGACAAAACAA 3 71 192 Antisense
AATACTTTTTTGACAGCCTACTATA 31 173 226 Antisense
TATAGCCATATTTTTATCAACAAGC 132 661 274 Antisense
Sequence Source Affymetrix Proprietary Database