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[178675_at]

Description F47G9.6 /REP_DB=WormBase Gene ID /WP=CE05887 /TR=Q20549 /GB=CAA98483.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 02      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 5.8
(-3)
A 		9.9
(-2.5)
A 		8.8
(-2.7)
A 		59.8
(3)
A 		54
B 7
(-3)
A 		10.1
(-0.7)
A 		7.3
(-2.8)
A 		15
(3)
A 		8
C 13.1
(-2.2)
A 		7.7
(-2.7)
A 		5.1
(-3)
A 		61.8
(3)
A 		57
avr 8.6
(-2.8) 		9.2
(-2.7) 		7.1
(-3) 		45.5
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 12.5
(2.6)
A 		4.4
(-2.3)
A 		13.2
(3)
A 		4
(-2.5)
A 		4.8
(-2)
A 		3.2
(-3)
A 		10
B 7
(0.2)
A 		4.9
(-1.4)
A 		10.7
(3)
A 		5.5
(-0.9)
A 		4.5
(-1.7)
A 		2.8
(-3)
A 		8
C 10.7
(-0.2)
A 		18.5
(3)
A 		3.8
(-3)
A 		9.9
(-0.5)
A 		4
(-2.9)
A 		4.5
(-2.7)
A 		15
avr 10.1
(3) 		9.3
(2.3) 		9.2
(2.2) 		6.5
(-0.3) 		4.4
(-2.2) 		3.5
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.1
(-3)
A 		2.1
(-3)
A 		2.3
(-2.8)
A 		8.7
(3)
A 		7
B 2.2
(-1)
A 		2.5
(0.2)
A 		1.7
(-3)
A 		3.2
(3)
A 		2
C 4.3
(-1.3)
A 		2.2
(-2.7)
A 		1.8
(-3)
A 		10.4
(3)
A 		9
avr 2.9
(-1.9) 		2.3
(-2.6) 		1.9
(-3) 		7.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.3
(1.3)
A 		1.6
(-0.7)
A 		2.9
(3)
A 		1
(-2.4)
A 		1.5
(-1)
A 		0.8
(-3)
A 		2
B 2.4
(2.2)
A 		1.6
(-1)
A 		2.6
(3)
A 		1.5
(-1.4)
A 		1.8
(-0.2)
A 		1.1
(-3)
A 		2
C 4
(0.8)
A 		5.7
(3)
A 		1
(-3)
A 		2
(-1.7)
A 		1.3
(-2.6)
A 		1.5
(-2.4)
A 		5
avr 2.9
(2.7) 		3
(3) 		2.2
(0.5) 		1.5
(-1.7) 		1.5
(-1.7) 		1.1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178675_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14373
Sequence Type Exemplar sequence
Representative Public ID F47G9.6 NCBI
Target Description F47G9.6 /REP_DB=WormBase Gene ID /WP=CE05887 /TR=Q20549 /GB=CAA98483.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073479 NCBI Caenorhabditis elegans F47G9.6 (F47G9.6) mRNA, complete cds. 11/11 None
SNAP00000034552 ENSEMBL cdna:SNAP chromosome:CEL140:V:11331910:11333369:1 11/11 None
GENEFINDER00000034555 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11332249:11333369:1 11/11 None
F47G9.6 ENSEMBL cdna:known chromosome:CEL140:V:11331988:11333369:1 gene:F47G9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11331987-11333369(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G9.6
Entrez Gene 185950 Entrez gene
SwissProt Q20549 EMBL-EBI
WormBase CE05887 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98483 Hypothetical protein F47G9.6 [Caenorhabditis elegans] ref|NP_505880.1| F47G9.6 [Caenorhabditis elegans] 0.0
blast CAA98483 Hypothetical protein F47G9.6 [Caenorhabditis elegans] ref|NP_505880.1| F47G9.6 [Caenorhabditis elegans] 1.0E-177
blast CAA98483 Hypothetical protein F47G9.6 [Caenorhabditis elegans] ref|NP_505880.1| F47G9.6 [Caenorhabditis elegans] 1.0E-132
blast AAA62522 Hypothetical protein F40H6.5 [Caenorhabditis elegans] ref|NP_498318.1| F40H6.5 [Caenorhabditis elegans] sp|Q09277|YPX5_CAEEL Hypothetical protein F40H6.5 in chromosome III 1.0E-59
blast AAA62522 Hypothetical protein F40H6.5 [Caenorhabditis elegans] ref|NP_498318.1| F40H6.5 [Caenorhabditis elegans] sp|Q09277|YPX5_CAEEL Hypothetical protein F40H6.5 in chromosome III 4.0E-46
blast CAE64407 Hypothetical protein CBG09099 [Caenorhabditis briggsae] 3.0E-39
blast CAE64407 Hypothetical protein CBG09099 [Caenorhabditis briggsae] 4.0E-39
Sequence
Target Sequence 
>C. ELEGANS:178675_AT
gaactcttggttacgcatttgagcctatatcaatccctacaaatttacctatctactctc
taattgaaacagaagtagaagatgatgttacgactccgtcaccatatgtccctaaatata
tcaaatccgctccaatcgacttattcaggcctgctggtactcgccctcaaactaaattct
cagttggaggggatttgaaaatagttccacaatctcaaagtgttgcaagagttaatcaaa
caaaggcatgtgcatttagtagtcaaatagttctgcaggaacttgaaaaatgtggaaaaa
taacaacaatattccaatgggttaatcaagagcaaggatttcttagacttagcacggata
ttgctatgattgttccaacaactcctgtcacatggctcggaaagtttggttatgcattcg
agtcaaacgatgataataaatgtgatttcccattggtaaaaatttcggctggcgatgagg
atgaaaatgcattgaaaacctctggatacacacctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTCTTGGTTACGCATTTGAGCC 611 349 539 Antisense
GAGCCTATATCAATCCCTACAAATT 481 385 559 Antisense
TACAAATTTACCTATCTACTCTCTA 229 643 576 Antisense
AGATGATGTTACGACTCCGTCACCA 112 67 618 Antisense
CCGTCACCATATGTCCCTAAATATA 388 263 634 Antisense
ATCAAATCCGCTCCAATCGACTTAT 104 27 658 Antisense
GACTTATTCAGGCCTGCTGGTACTC 153 371 676 Antisense
ACTCGCCCTCAAACTAAATTCTCAG 480 99 697 Antisense
GGATTTCTTAGACTTAGCACGGATA 589 509 874 Antisense
AACTCCTGTCACATGGCTCGGAAAG 647 141 918 Antisense
GAAAACCTCTGGATACACACCTACT 665 353 1032 Antisense
Sequence Source Affymetrix Proprietary Database