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[178671_at]

Description F56D5.4 /REP_DB=WormBase Gene ID /WP=CE05970 /TR=Q20884 /GB=CAA93503.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      6grp_highest_nonorm > 70      6grp_total > 26      4grp_total > 30      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 394
1 2 3 4 range
A 440.4
(3)
P 		179.3
(-1.4)
A 		84.2
(-3)
A 		418
(2.6)
P 		356
B 451.9
(3)
P 		131.1
(-1.9)
A 		58.1
(-3)
A 		295.4
(0.6)
P 		394
C 382.4
(3)
P 		125
(-2.8)
A 		114.3
(-3)
P 		327.6
(1.8)
P 		268
avr 424.9
(3) 		145.1
(-1.9) 		85.5
(-3) 		347
(1.6) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 425.8
(3)
P 		330.1
(0.8)
P 		166.1
(-3)
P 		299
(0.1)
P 		251.3
(-1)
P 		226.3
(-1.6)
P 		260
B 305.5
(3)
P 		295.1
(2.3)
P 		223.1
(-2.5)
P 		290.4
(2)
P 		229.6
(-2)
P 		215.3
(-3)
P 		90
C 265.7
(-0.6)
P 		401.2
(3)
P 		256.7
(-0.8)
P 		175.9
(-2.9)
P 		173.2
(-3)
P 		238.8
(-1.3)
P 		228
avr 332.3
(2.5) 		342.1
(3) 		215.3
(-3) 		255.1
(-1.1) 		218
(-2.9) 		226.8
(-2.5) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 160.3
(3)
P 		38.9
(-2.3)
A 		22
(-3)
A 		61.2
(-1.3)
P 		138
B 144.1
(3)
P 		32.4
(-2.1)
A 		13.5
(-3)
A 		63
(-0.7)
P 		131
C 126.6
(3)
P 		35.9
(-3)
A 		39.8
(-2.7)
P 		55.2
(-1.7)
P 		91
avr 143.7
(3) 		35.7
(-2.5) 		25.1
(-3) 		59.8
(-1.2) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 78.5
(0.1)
P 		117.4
(3)
P 		36.2
(-3)
P 		75.8
(-0.1)
P 		75.8
(-0.1)
P 		55.1
(-1.6)
P 		81
B 106.3
(3)
P 		98.2
(2.1)
P 		54.2
(-3)
P 		76.9
(-0.4)
P 		93.3
(1.5)
P 		80.3
(0)
P 		52
C 98.5
(1.4)
P 		122.4
(3)
P 		65.3
(-0.9)
P 		35.4
(-3)
P 		56
(-1.6)
P 		80
(0.1)
P 		87
avr 94.4
(1.2) 		112.7
(3) 		51.9
(-3) 		62.7
(-1.9) 		75
(-0.7) 		71.8
(-1) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178671_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10255
Sequence Type Exemplar sequence
Representative Public ID F56D5.4 NCBI
Target Description F56D5.4 /REP_DB=WormBase Gene ID /WP=CE05970 /TR=Q20884 /GB=CAA93503.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000006196 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9402778:9404015:-1 10/11 None
F56D5.4 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:9402553:9404015:-1 gene:F56D5.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006179 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9402730-9404021(-) 100.0 100.0
Public Domain and Genome References
Ensembl F56D5.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T22778 hypothetical protein F56D5.4 - Caenorhabditis elegans 8.0E-89
blast AAB66196 Hypothetical protein K09F6.6 [Caenorhabditis elegans] ref|NP_494225.2| K09F6.6 [Caenorhabditis elegans] 9.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006196 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:178671_AT
gatgtacgacgagaaaccaactctttacaacgatcaaaatttaccagaaaagctccttcc
tgccccaattcttgcgccctggcactctaaatttaatctgcaatgtgtctatgccaaaag
gaacatcttctatgggttttttggatcccgtccagttgagaaatcgatcaggacaagagg
ttcaagagatatacaaccaaatggcgccaacattcttggtgtgcgtggacagaatcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTACGACGAGAAACCAACTCTT 179 401 414 Antisense
ACCAACTCTTTACAACGATCAAAAT 597 83 429 Antisense
TTTACCAGAAAAGCTCCTTCCTGCC 172 673 453 Antisense
CGCCCTGGCACTCTAAATTTAATCT 495 253 488 Antisense
TAATCTGCAATGTGTCTATGCCAAA 644 633 507 Antisense
AGGAACATCTTCTATGGGTTTTTTG 693 53 532 Antisense
TATGGGTTTTTTGGATCCCGTCCAG 359 655 544 Antisense
GGATCCCGTCCAGTTGAGAAATCGA 454 511 556 Antisense
GATATACAACCAAATGGCGCCAACA 435 425 601 Antisense
TGGCGCCAACATTCTTGGTGTGCGT 318 545 615 Antisense
CTTGGTGTGCGTGGACAGAATCGAA 160 219 628 Antisense
Sequence Source Affymetrix Proprietary Database