[Home] | [Total List]

[178670_at]

Description F40F8.3 /REP_DB=WormBase Gene ID /WP=CE05843 /TR=Q20231 /GB=CAA93265.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 31
(-3)
A 		69.7
(-1.6)
A 		62.9
(-1.9)
A 		200.4
(3)
A 		169
B 34.2
(-3)
A 		71.7
(-1.6)
A 		67
(-1.7)
A 		189.7
(3)
A 		156
C 78.7
(-2.1)
A 		61.1
(-2.6)
A 		49.1
(-3)
A 		249.8
(3)
A 		201
avr 48
(-3) 		67.5
(-2.3) 		59.7
(-2.6) 		213.3
(3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 3.7
(-3)
A 		74.3
(1.8)
A 		75.9
(1.9)
A 		91.3
(3)
A 		67
(1.3)
A 		77.5
(2.1)
A 		88
B 77.1
(-0.8)
A 		71
(-3)
A 		87.6
(3)
A 		77
(-0.8)
A 		78.9
(-0.1)
A 		71.1
(-3)
A 		17
C 66.4
(-3)
A 		79
(-1.7)
A 		102.7
(0.7)
A 		124.5
(3)
A 		69.9
(-2.6)
A 		116.6
(2.2)
M 		58
avr 49.1
(-3) 		74.8
(0.2) 		88.7
(1.9) 		97.6
(3) 		71.9
(-0.2) 		88.4
(1.9) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 11.3
(-3)
A 		15.1
(-1.7)
A 		16.4
(-1.3)
A 		29.3
(3)
A 		18
B 10.9
(-3)
A 		17.7
(-1.6)
A 		15.5
(-2.1)
A 		40.4
(3)
A 		30
C 26
(-0.9)
A 		17.6
(-2.9)
A 		17.1
(-3)
A 		42.1
(3)
A 		25
avr 16.1
(-3) 		16.8
(-2.8) 		16.3
(-2.9) 		37.3
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 0.7
(-3)
A 		26.4
(3)
A 		16.5
(0.7)
A 		23.2
(2.3)
A 		20.2
(1.6)
A 		18.9
(1.2)
A 		26
B 26.8
(0.3)
A 		23.6
(-1.4)
A 		21.3
(-2.5)
A 		20.4
(-3)
A 		32.1
(3)
A 		26.5
(0.1)
A 		12
C 24.6
(-2.3)
A 		24.1
(-2.5)
A 		26.1
(-1.7)
A 		25
(-2.1)
A 		22.6
(-3)
A 		39
(3)
M 		16
avr 17.4
(-3) 		24.7
(1.1) 		21.3
(-0.8) 		22.9
(0.1) 		25
(1.3) 		28.1
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3344
Sequence Type Exemplar sequence
Representative Public ID F40F8.3 NCBI
Target Description F40F8.3 /REP_DB=WormBase Gene ID /WP=CE05843 /TR=Q20231 /GB=CAA93265.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063986 NCBI Caenorhabditis elegans F40F8.3 (F40F8.3) mRNA, complete cds. 11/11 None
F40F8.3 ENSEMBL cdna:known chromosome:CEL140:II:11129202:11130611:1 gene:F40F8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001351 5/11 Cross Hyb Matching Probes None
SNAP00000001352 5/11 Cross Hyb Matching Probes None
GENEFINDER00000001363 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11129198-11130608(+) 96.81 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F8.3
Entrez Gene 185540 Entrez gene
SwissProt Q20231 EMBL-EBI
WormBase CE05843 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93265 Hypothetical protein F40F8.3 [Caenorhabditis elegans] ref|NP_496387.1| F40F8.3 [Caenorhabditis elegans] 1.0E-106
blast CAE59432 Hypothetical protein CBG02804 [Caenorhabditis briggsae] 5.0E-28
blast CAE59563 Hypothetical protein CBG02960 [Caenorhabditis briggsae] 1.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496387.1 4 31-49,64-86,107-129,191-213
F40F8.3 4 31-49,64-86,107-129,191-213
Sequence
Target Sequence 
>C. ELEGANS:178670_AT
tcatgttttggctgcagtcgctggaatgtgtggctcaatgggagcagtttcggggaagct
cgcgttcgattgggatctcgaacaatacgcaagatgctcctgtgtcgccgtctttattgg
atcaaatattgtaatgtgggccacctacacacgagctctggcactttccgattgcaccag
cacccctatgatcatcaatatggcctgcaatttcgctctgacgtcccttttcaaattctc
gttcagcagcatgcaaacctatattctacttcttccatttttcatagcgtattctgtatg
ccaatctagtttttcacacgcatcttctactccatctgtcacaacttccaagtatgccaa
ctcttcaccgacaccttccgacgcagtcgactctaatcaggattcttcaactacagattc
ggatgcattgaacctcgacgatgttgagaagcttgtcacctatacgacgaaacaaaaaac
tattttcattgcgtgctgtggaggaacattcgtacttctcgttgccttggccattctctc
tggactttcggataca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGTTTTGGCTGCAGTCGCTGGA 462 621 105 Antisense
GAAGCTCGCGTTCGATTGGGATCTC 426 343 159 Antisense
AATACGCAAGATGCTCCTGTGTCGC 356 173 188 Antisense
CTGTGTCGCCGTCTTTATTGGATCA 253 241 204 Antisense
TCAATATGGCCTGCAATTTCGCTCT 639 633 299 Antisense
CTGACGTCCCTTTTCAAATTCTCGT 684 237 322 Antisense
GCAAACCTATATTCTACTTCTTCCA 107 319 357 Antisense
GCCAATCTAGTTTTTCACACGCATC 80 279 404 Antisense
ACTTCCAAGTATGCCAACTCTTCAC 363 103 448 Antisense
TCCGACGCAGTCGACTCTAATCAGG 141 595 481 Antisense
CATTCTCTCTGGACTTTCGGATACA 32 217 636 Antisense
Sequence Source Affymetrix Proprietary Database