[Home] | [Total List]

[178667_at]

Description W08E3.4 /REP_DB=WormBase Gene ID /WP=CE14710 /TR=P91915 /GB=CAB07129.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 1
(-3)
A 		3.2
(-1.9)
A 		5.4
(-0.8)
A 		13
(3)
A 		12
B 1.6
(-3)
A 		1.7
(-3)
A 		17.1
(-0.1)
A 		33.8
(3)
A 		32
C 14.8
(-1.8)
A 		29.2
(-0.4)
A 		2.3
(-3)
A 		63.8
(3)
A 		62
avr 5.8
(-3) 		11.4
(-1.9) 		8.3
(-2.5) 		36.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 2.1
(-3)
A 		8.1
(-2.6)
A 		2
(-3)
A 		48.1
(-0.2)
A 		39.8
(-0.7)
A 		101.9
(3)
P 		100
B 1.2
(-3)
A 		5.9
(-2.6)
A 		2
(-2.9)
A 		27.6
(-0.6)
A 		66.4
(3)
P 		64.2
(2.8)
P 		65
C 1.8
(-3)
A 		18.7
(-1.4)
A 		4.5
(-2.7)
A 		37
(0.3)
A 		38.7
(0.5)
A 		65.5
(3)
P 		64
avr 1.7
(-3) 		10.9
(-2.3) 		2.8
(-2.9) 		37.6
(-0.1) 		48.3
(0.7) 		77.2
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.4
(-3)
A 		0.7
(-1.8)
A 		1.4
(1)
A 		1.9
(3)
A 		2
B 0.5
(-2.9)
A 		0.4
(-3)
A 		4
(0.2)
A 		7.2
(3)
A 		7
C 4.9
(-0.5)
A 		8.4
(1.6)
A 		0.8
(-3)
A 		10.8
(3)
A 		10
avr 1.9
(-3) 		3.2
(-1.3) 		2.1
(-2.7) 		6.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.9
(-2.4)
A 		0.4
(-3)
A 		12.2
(-0.1)
A 		12
(-0.1)
A 		24.8
(3)
P 		24
B 0.4
(-3)
A 		2
(-2.6)
A 		0.5
(-3)
A 		7.3
(-1.4)
A 		27
(3)
P 		23.9
(2.3)
P 		27
C 0.7
(-3)
A 		5.7
(-1.6)
A 		1.1
(-2.9)
A 		7.4
(-1.1)
A 		12.5
(0.3)
A 		21.9
(3)
P 		21
avr 0.5
(-3) 		3.5
(-2.2) 		0.7
(-2.9) 		9
(-0.8) 		17.2
(1.4) 		23.5
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178667_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2271
Sequence Type Exemplar sequence
Representative Public ID W08E3.4 NCBI
Target Description W08E3.4 /REP_DB=WormBase Gene ID /WP=CE14710 /TR=P91915 /GB=CAB07129.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060946(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060946 NCBI Caenorhabditis elegans W08E3.4 (W08E3.4) mRNA, complete cds. 10/11 None
SNAP00000036232 ENSEMBL cdna:SNAP chromosome:CEL140:I:13345579:13347007:-1 10/11 None
GENEFINDER00000036236 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13345579:13347007:-1 11/11 None
W08E3.4 ENSEMBL cdna:known chromosome:CEL140:I:13345579:13346232:-1 gene:W08E3.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13345509-13346163(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08E3.4
Entrez Gene 189290 Entrez gene
SwissProt P91915 EMBL-EBI
WormBase CE32508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE73011 Hypothetical protein CBG20367 [Caenorhabditis briggsae] 3.0E-93
blast CAE73011 Hypothetical protein CBG20367 [Caenorhabditis briggsae] 5.0E-91
blast CAB07129 Hypothetical protein W08E3.4 [Caenorhabditis elegans] ref|NP_493347.2| W08E3.4 [Caenorhabditis elegans] 6.0E-63
blast CAB07129 Hypothetical protein W08E3.4 [Caenorhabditis elegans] ref|NP_493347.2| W08E3.4 [Caenorhabditis elegans] 3.0E-62
blast CAB07129 Hypothetical protein W08E3.4 [Caenorhabditis elegans] ref|NP_493347.2| W08E3.4 [Caenorhabditis elegans] 6.0E-60
blast CAE73011 Hypothetical protein CBG20367 [Caenorhabditis briggsae] 3.0E-42
Sequence
Target Sequence 
>C. ELEGANS:178667_AT
tcgagtcggcagtggagatttcaaagacggcaaccgattttcatacggctctcgacgcgt
cttcagtgattggttcggatcgtgtggatcagcttaagtgtaatagagcgccgattctaa
acctgacgaaaagtgacacagcactgcttgaatctaatataactcaggcaaaacagctga
aaatcactttggatgcacaattgcaacaaagaaaagctctggtcgatgagtacaagtcga
aactgacagtgctggaaggaagttacatgcgcaaaagtgcagaggttcaacgtctccaaa
acgagcttcaaaatgctcagaaggctcatgcaatgaaagccaccactgctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGTCGGCAGTGGAGATTTCAAA 634 599 20 Antisense
GCAACCGATTTTCATACGGCTCTCG 61 321 49 Antisense
GCGTCTTCAGTGATTGGTTCGGATC 51 293 76 Antisense
GGTTCGGATCGTGTGGATCAGCTTA 172 507 91 Antisense
ATAGAGCGCCGATTCTAAACCTGAC 243 23 122 Antisense
CACAGCACTGCTTGAATCTAATATA 474 183 156 Antisense
GCTGGAAGGAAGTTACATGCGCAAA 47 295 270 Antisense
AAGTGCAGAGGTTCAACGTCTCCAA 268 159 294 Antisense
GTTCAACGTCTCCAAAACGAGCTTC 277 445 304 Antisense
AATGCTCAGAAGGCTCATGCAATGA 444 165 331 Antisense
ATGCAATGAAAGCCACCACTGCTCC 589 43 347 Antisense
Sequence Source Affymetrix Proprietary Database