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[178665_at]

Description W04A8.3 /REP_DB=WormBase Gene ID /WP=CE16537 /TR=Q9XUM2 /GB=CAB04904.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 21.6
(-0)
A 		41
(3)
A 		15.4
(-1)
A 		2.5
(-3)
A 		39
B 2.6
(-3)
A 		30
(3)
A 		16.5
(0)
A 		5.1
(-2.5)
A 		27
C 5.2
(-3)
A 		31.7
(1.4)
A 		36.8
(2.3)
A 		41.2
(3)
P 		36
avr 9.8
(-3) 		34.2
(3) 		22.9
(0.2) 		16.3
(-1.4) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 4.5
(-3)
A 		25.7
(0.2)
A 		42.4
(2.7)
A 		4.2
(-3)
A 		44.5
(3)
A 		41.5
(2.6)
A 		40
B 15.9
(-0.3)
A 		11.1
(-1.2)
A 		20.7
(0.6)
A 		1.6
(-3)
A 		33.5
(3)
A 		21.4
(0.7)
A 		32
C 21.2
(-1.2)
A 		28.9
(0.6)
A 		20.2
(-1.4)
A 		21.7
(-1.1)
A 		13.5
(-3)
A 		39.4
(3)
A 		26
avr 13.9
(-1.9) 		21.9
(0.1) 		27.8
(1.5) 		9.2
(-3) 		30.5
(2.1) 		34.1
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.8
(2.2)
A 		8.9
(3)
A 		4
(-0.5)
A 		0.4
(-3)
A 		9
B 0.8
(-3)
A 		7.4
(3)
A 		3.8
(-0.3)
A 		1.1
(-2.7)
A 		7
C 1.7
(-3)
A 		9.1
(1)
A 		12.8
(3)
A 		6.9
(-0.2)
P 		11
avr 3.4
(-2.4) 		8.5
(3) 		6.9
(1.3) 		2.8
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.8
(-3)
A 		9.1
(1)
A 		9.2
(1)
A 		1.1
(-2.9)
A 		13.4
(3)
A 		10.1
(1.4)
A 		13
B 5.5
(-0.7)
A 		3.7
(-1.5)
A 		5
(-0.9)
A 		0.4
(-3)
A 		13.6
(3)
A 		8
(0.5)
A 		13
C 7.8
(-0.7)
A 		8.8
(0)
A 		5.1
(-2.5)
A 		4.4
(-3)
A 		4.4
(-3)
A 		13.2
(3)
A 		9
avr 4.7
(-1.1) 		7.2
(0.7) 		6.4
(0.1) 		2
(-3) 		10.5
(3) 		10.4
(2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178665_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1217
Sequence Type Exemplar sequence
Representative Public ID W04A8.3 NCBI
Target Description W04A8.3 /REP_DB=WormBase Gene ID /WP=CE16537 /TR=Q9XUM2 /GB=CAB04904.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061022(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061022 NCBI Caenorhabditis elegans W04A8.3 (W04A8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000006538 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13850045:13854122:-1 11/11 None
SNAP00000006527 ENSEMBL cdna:SNAP chromosome:CEL140:I:13852861:13854179:-1 11/11 None
W04A8.3 ENSEMBL cdna:known chromosome:CEL140:I:13852847:13854122:-1 gene:W04A8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13852798-13854053(-) 92.41 100.0
Public Domain and Genome References
Gene Title
Ensembl W04A8.3
Entrez Gene 173254 Entrez gene
SwissProt Q9XUM2 EMBL-EBI
WormBase CE16537 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04904 Hypothetical protein W04A8.3 [Caenorhabditis elegans] ref|NP_493423.1| W04A8.3 [Caenorhabditis elegans] 0.0
blast CAB04904 Hypothetical protein W04A8.3 [Caenorhabditis elegans] ref|NP_493423.1| W04A8.3 [Caenorhabditis elegans] 1.0E-159
blast CAB04904 Hypothetical protein W04A8.3 [Caenorhabditis elegans] ref|NP_493423.1| W04A8.3 [Caenorhabditis elegans] 1.0E-158
blast CAB04908 Hypothetical protein W04A8.4 [Caenorhabditis elegans] ref|NP_493422.1| W04A8.4 [Caenorhabditis elegans] 3.0E-56
blast CAB04905 Hypothetical protein W04A8.5 [Caenorhabditis elegans] ref|NP_493424.1| W04A8.5 [Caenorhabditis elegans] 6.0E-24
blast CAB04905 Hypothetical protein W04A8.5 [Caenorhabditis elegans] ref|NP_493424.1| W04A8.5 [Caenorhabditis elegans] 4.0E-23
blast CAB04905 Hypothetical protein W04A8.5 [Caenorhabditis elegans] ref|NP_493424.1| W04A8.5 [Caenorhabditis elegans] 7.0E-23
blast CAA93768 Hypothetical protein C47D12.4 [Caenorhabditis elegans] ref|NP_496494.1| C47D12.4 [Caenorhabditis elegans] 4.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002562 EMBL-EBI 3-5 exonuclease 1.2E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000006527 1 300-322
Sequence
Target Sequence 
>C. ELEGANS:178665_AT
acctttgaactcgaagcgctcttcattaatagtcatcgaaaggatattgaagttgaactc
cgtcagctattaaattttctgaaaacggaggctctacacttacctagattaaaattcaag
catgaacacatatccagcaaacttttaaaacgtatcctaaaattcgatgtgtattatttg
gatattcgtgtcatcaagccaaagaccatgaaatgtgccaactggaaggtcctcagcaag
tacatttctgtcaatttagaaggtatcaatatttccagtaagcaagccaacaagtttctg
aaaaagctgaaggaaaaaggaagactaatgtcattttcggcaaccaacatgaagagcagt
cttgtaccatctgcagttgtgaagggtacgaggtcaatggaaaatatggaaatttcggat
tcagcagaagtggaacgtcgctctgtgttcaattgctttaggccttcattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTTTGAACTCGAAGCGCTCTTCA 548 85 331 Antisense
AGCGCTCTTCATTAATAGTCATCGA 152 83 345 Antisense
ATTGAAGTTGAACTCCGTCAGCTAT 387 5 376 Antisense
AAACGGAGGCTCTACACTTACCTAG 556 117 413 Antisense
GCATGAACACATATCCAGCAAACTT 256 311 450 Antisense
GGATATTCGTGTCATCAAGCCAAAG 595 509 510 Antisense
GGAAGGTCCTCAGCAAGTACATTTC 431 531 554 Antisense
GACTAATGTCATTTTCGGCAACCAA 620 367 653 Antisense
AGTCTTGTACCATCTGCAGTTGTGA 687 61 688 Antisense
GGAACGTCGCTCTGTGTTCAATTGC 95 531 762 Antisense
GTTCAATTGCTTTAGGCCTTCATTT 444 445 777 Antisense
Sequence Source Affymetrix Proprietary Database