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[178662_s_at]

Description T23G7.2 /REP_DB=WormBase Gene ID /WP=CE03703 /TR=Q22704 /GB=CAA92700.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 63      6grp_total > 73      4grp_total > 48      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 505.1
(-3)
P 		656.1
(1.3)
P 		716
(3)
P 		655
(1.3)
P 		211
B 451.2
(-3)
P 		680.7
(2.1)
P 		718.9
(3)
P 		491.3
(-2.1)
P 		268
C 548.4
(-3)
P 		622.3
(-1.2)
P 		788.1
(3)
P 		611.7
(-1.4)
P 		240
avr 501.6
(-3) 		653
(0.8) 		741
(3) 		586
(-0.9) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 451.7
(-3)
P 		539.6
(-1.8)
P 		742.8
(0.9)
P 		900.5
(3)
P 		700.4
(0.3)
P 		558.5
(-1.6)
P 		449
B 590.7
(-2.3)
P 		549.2
(-3)
P 		710.8
(-0.2)
P 		897.3
(3)
P 		772.1
(0.8)
P 		606.6
(-2)
P 		348
C 467.8
(-3)
P 		606.9
(-1.2)
P 		643.7
(-0.8)
P 		942.5
(3)
P 		745.8
(0.5)
P 		684
(-0.3)
P 		475
avr 503.4
(-3) 		565.2
(-2.1) 		699.1
(-0.1) 		913.4
(3) 		739.4
(0.5) 		616.4
(-1.3) 		410
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 183.9
(2.8)
P 		142.4
(0.1)
P 		187.2
(3)
P 		95.9
(-3)
P 		91
B 143.9
(0.7)
P 		168.1
(3)
P 		166.6
(2.9)
P 		104.7
(-3)
P 		63
C 181.5
(-0.3)
P 		178.9
(-0.3)
P 		274.7
(3)
P 		103.1
(-3)
P 		172
avr 169.8
(0.8) 		163.1
(0.4) 		209.5
(3) 		101.2
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 83.3
(-3)
P 		191.9
(1.5)
P 		161.8
(0.2)
P 		228.4
(3)
P 		211.4
(2.3)
P 		136
(-0.8)
P 		145
B 205.5
(-1.6)
P 		182.8
(-2.6)
P 		172.6
(-3)
P 		237.7
(-0.2)
P 		313.7
(3)
P 		226.2
(-0.7)
P 		141
C 173.4
(-2.3)
P 		185.2
(-1.3)
P 		163.8
(-3)
P 		189.5
(-1)
P 		241.3
(3)
P 		229
(2)
P 		78
avr 154.1
(-3) 		186.6
(-1.1) 		166.1
(-2.3) 		218.5
(0.8) 		255.5
(3) 		197.1
(-0.5) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178662_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2868
Sequence Type Exemplar sequence
Representative Public ID T23G7.2 NCBI
Target Description T23G7.2 /REP_DB=WormBase Gene ID /WP=CE03703 /TR=Q22704 /GB=CAA92700.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027185(11), NR_002364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027185 NCBI Caenorhabditis elegans T23G7.2a (T23G7.2) mRNA, complete cds. 11/11 None
NR_002364 NCBI Caenorhabditis elegans T23G7.2, miscRNA. 11/11 None
SNAP00000032783 ENSEMBL cdna:SNAP chromosome:CEL140:II:9165979:9172835:-1 11/11 None
GENEFINDER00000032791 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9165979:9169302:-1 11/11 None
T23G7.2a ENSEMBL cdna:known chromosome:CEL140:II:9167860:9172835:-1 gene:T23G7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9167948-9172856(-) 100.0 100.0
Public Domain and Genome References
Ensembl T23G7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92700 Hypothetical protein T23G7.2a [Caenorhabditis elegans] ref|NP_001022356.1| T23G7.2a [Caenorhabditis elegans] 0.0
blast CAE57888 Hypothetical protein CBG00934 [Caenorhabditis briggsae] 0.0
blast CAE57888 Hypothetical protein CBG00934 [Caenorhabditis briggsae] 1.0E-177
blast CAA92701 Hypothetical protein T23G7.3 [Caenorhabditis elegans] ref|NP_495955.1| T23G7.3 [Caenorhabditis elegans] 3.0E-93
blast CAA92701 Hypothetical protein T23G7.3 [Caenorhabditis elegans] ref|NP_495955.1| T23G7.3 [Caenorhabditis elegans] 4.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-21
Pfam IPR000467 EMBL-EBI D111/G-patch domain 4.3E-16
Pfam IPR000467 EMBL-EBI D111/G-patch domain 4.3E-16
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022356.1 5 7-26,41-58,90-112,122-144,176-198
T23G7.2a 5 7-26,41-58,90-112,122-144,176-198
SNAP00000032783 5 7-26,41-58,90-112,122-144,176-198
GENEFINDER00000032791 3 13-35,40-62,95-117
Sequence
Target Sequence 
>C. ELEGANS:178662_S_AT
gatatggtagatgctcctgttgcggaaatcgaggatagagttcgaccaattcttcaactc
cctgctcacgcacctacttatttcgtaactggcaatcatgaatattattatggagacgtt
caggaatggataagattctacaaaaatggccgtattaatgttcttgaaaacgaaagtaca
atgctgaaaggagtctgtttggctggagtaaacgatatttcaagtccgaaatctggaatc
ttgaacactaaaatggatctaccaaaagccatccatcgatgtccatcaaatacttctcaa
atcgtcatggcacacaatccggcatcaattcgagaattcatcgtagatcatccgaaagaa
ttatcagaaattgatattgtcttatctggacacactcatgcaggacaattctacgtagtt
attccagtagtttattggcttctaccatacttttatggactctatgagattccatttgga
ggtcaattgatggtaatggcaggatcattgtatcaaggaccaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGGTAGATGCTCCTGTTGCGG 488 425 799 Antisense
GCTCACGCACCTACTTATTTCGTAA 583 301 862 Antisense
GAAAGGAGTCTGTTTGGCTGGAGTA 487 359 984 Antisense
GATCTACCAAAAGCCATCCATCGAT 26 421 1054 Antisense
TCGATGTCCATCAAATACTTCTCAA 482 603 1074 Antisense
ACTTCTCAAATCGTCATGGCACACA 688 103 1090 Antisense
CACACAATCCGGCATCAATTCGAGA 656 193 1109 Antisense
GTCTTATCTGGACACACTCATGCAG 277 469 1177 Antisense
CACTCATGCAGGACAATTCTACGTA 485 197 1191 Antisense
GTTTATTGGCTTCTACCATACTTTT 207 449 1228 Antisense
AGGATCATTGTATCAAGGACCACCC 101 55 1299 Antisense
Sequence Source Affymetrix Proprietary Database