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[178661_at]

Description F14D7.1 /REP_DB=WormBase Gene ID /WP=CE09379 /TR=Q19454 /GB=CAB01158.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.1
(-3)
A 		3.2
(1.7)
A 		1.3
(-2.6)
A 		3.8
(3)
A 		3
B 1.5
(-3)
A 		4
(3)
A 		2.2
(-1.3)
A 		3.2
(1.1)
A 		3
C 1.3
(-2.3)
A 		1.5
(-2)
A 		0.8
(-3)
A 		4.8
(3)
A 		4
avr 1.3
(-3) 		2.9
(0.7) 		1.4
(-2.8) 		3.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.8
(1.3)
A 		0.8
(-3)
A 		1.2
(-1.3)
A 		2
(2.1)
A 		1.4
(-0.4)
A 		2.2
(3)
A 		1
B 2.5
(0.6)
A 		1.5
(-1.4)
A 		0.7
(-3)
A 		2.8
(1.2)
A 		3.5
(2.6)
A 		3.7
(3)
A 		3
C 2.6
(-1.7)
A 		2
(-3)
A 		2
(-3)
A 		4.8
(3)
A 		4.4
(2.1)
A 		3
(-0.9)
A 		3
avr 2.3
(0.2) 		1.4
(-2.7) 		1.3
(-3) 		3.2
(3) 		3.1
(2.7) 		3
(2.4) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.4
(-1.5)
A 		0.7
(3)
A 		0.3
(-3)
A 		0.6
(1.5)
A 		0
B 0.5
(-3)
A 		1
(3)
A 		0.5
(-3)
A 		0.7
(-0.6)
A 		1
C 0.4
(-1.8)
A 		0.4
(-1.8)
A 		0.3
(-3)
A 		0.8
(3)
A 		1
avr 0.4
(-3) 		0.7
(3) 		0.4
(-3) 		0.7
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.5
(3)
A 		0.4
(0)
A 		0.5
(3)
A 		0
B 0.9
(0.5)
A 		0.5
(-1.5)
A 		0.2
(-3)
A 		0.8
(0)
A 		1.4
(3)
A 		1.4
(3)
A 		1
C 1
(0.3)
A 		0.6
(-2.3)
A 		0.5
(-3)
A 		1
(0.3)
A 		1.4
(3)
A 		1
(0.3)
A 		1
avr 0.7
(-0) 		0.5
(-1.5) 		0.3
(-3) 		0.8
(0.8) 		1.1
(3) 		1
(2.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14346
Sequence Type Exemplar sequence
Representative Public ID F14D7.1 NCBI
Target Description F14D7.1 /REP_DB=WormBase Gene ID /WP=CE09379 /TR=Q19454 /GB=CAB01158.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074138(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074138 NCBI Caenorhabditis elegans F14D7.1 (F14D7.1) mRNA, complete cds. 11/11 None
SNAP00000017353 ENSEMBL cdna:SNAP chromosome:CEL140:V:14291321:14292051:-1 11/11 None
GENEFINDER00000017368 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14291321:14292305:-1 11/11 None
F14D7.1 ENSEMBL cdna:known chromosome:CEL140:V:14291527:14291873:-1 gene:F14D7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14291526-14291873(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14D7.1
Entrez Gene 184462 Entrez gene
SwissProt Q19454 EMBL-EBI
WormBase CE09379 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94574 Hypothetical protein C25G4.8 [Caenorhabditis elegans] ref|NP_502382.1| C25G4.8 [Caenorhabditis elegans] 1.0E-75
blast CAB00877 Hypothetical protein T16A9.3 [Caenorhabditis elegans] ref|NP_506517.2| T16A9.3 [Caenorhabditis elegans] 2.0E-72
blast CAE60487 Hypothetical protein CBG04101 [Caenorhabditis briggsae] 5.0E-65
blast CAA94574 Hypothetical protein C25G4.8 [Caenorhabditis elegans] ref|NP_502382.1| C25G4.8 [Caenorhabditis elegans] 2.0E-55
blast CAB00877 Hypothetical protein T16A9.3 [Caenorhabditis elegans] ref|NP_506517.2| T16A9.3 [Caenorhabditis elegans] 2.0E-54
blast CAB01158 Hypothetical protein F14D7.1 [Caenorhabditis elegans] ref|NP_506539.1| F14D7.1 [Caenorhabditis elegans] 1.0E-52
blast NP_491048 W03D8.7 [Caenorhabditis elegans] gb|AAK21493.1| Hypothetical protein W03D8.7 [Caenorhabditis elegans] 5.0E-50
blast CAA94574 Hypothetical protein C25G4.8 [Caenorhabditis elegans] ref|NP_502382.1| C25G4.8 [Caenorhabditis elegans] 8.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 5.7E-31
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 5.7E-31
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 5.7E-31
Sequence
Target Sequence 
>C. ELEGANS:178661_AT
tacaaaaagcctgttctcttcacgccaaagcttgctttcgatatttacacgttggccaag
caatggaaggtttctaaactaggtgctcacaaaagctctcttgagaaacagctatgtgag
gagctgaaaaagaaccacgaagatctgatgtacgtttgcaatttgctgatcgtttccgaa
gattctcatttccacagagttgaaaattgctgcattgccactttggttttctatcatgct
cacgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAAAAAGCCTGTTCTCTTCACGC 471 641 28 Antisense
TCTTCACGCCAAAGCTTGCTTTCGA 97 617 44 Antisense
AAGCTTGCTTTCGATATTTACACGT 471 151 55 Antisense
CGATATTTACACGTTGGCCAAGCAA 435 247 66 Antisense
GTTGGCCAAGCAATGGAAGGTTTCT 335 433 78 Antisense
GAAGGTTTCTAAACTAGGTGCTCAC 432 333 93 Antisense
TAGGTGCTCACAAAAGCTCTCTTGA 128 655 107 Antisense
AAGAACCACGAAGATCTGATGTACG 193 153 157 Antisense
GATCTGATGTACGTTTGCAATTTGC 315 419 169 Antisense
ACTTTGGTTTTCTATCATGCTCACG 17 103 247 Antisense
TTGGTTTTCTATCATGCTCACGATT 427 707 250 Antisense
Sequence Source Affymetrix Proprietary Database