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[178660_at]

Description C47E8.1 /REP_DB=WormBase Gene ID /WP=CE05437 /TR=Q18686 /GB=CAA99791.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 34      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 6.9
(-3)
A 		65.1
(3)
P 		29.6
(-0.7)
A 		47
(1.1)
A 		58
B 25.1
(-3)
A 		40.1
(3)
A 		37.1
(1.8)
A 		25.2
(-3)
A 		15
C 19.8
(-3)
A 		44.4
(0.3)
A 		38.1
(-0.6)
A 		64.8
(3)
A 		45
avr 17.3
(-3) 		49.9
(3) 		34.9
(0.2) 		45.7
(2.2) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 69.8
(-0.6)
A 		37.6
(-3)
A 		37.3
(-3)
A 		64.5
(-1)
A 		119.8
(3)
P 		42.2
(-2.6)
A 		83
B 37.1
(-2.6)
A 		37.7
(-2.5)
A 		58.7
(-0.1)
A 		33.2
(-3)
A 		86.5
(3)
P 		59.7
(-0)
P 		53
C 26.5
(-3)
A 		53.2
(-0.1)
A 		28.4
(-2.8)
A 		41.9
(-1.3)
A 		70.6
(1.8)
P 		81.1
(3)
P 		55
avr 44.5
(-2.6) 		42.8
(-2.8) 		41.5
(-3) 		46.5
(-2.4) 		92.3
(3) 		61
(-0.7) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.5
(-3)
A 		14.1
(3)
P 		7.7
(-0.3)
A 		6.9
(-0.7)
A 		12
B 8
(0.5)
A 		9.9
(3)
A 		8.6
(1.3)
A 		5.4
(-3)
A 		5
C 6.5
(-3)
A 		12.8
(2.6)
A 		13.3
(3)
A 		10.9
(0.9)
A 		7
avr 5.7
(-3) 		12.3
(3) 		9.9
(0.8) 		7.7
(-1.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 12.9
(-2)
A 		13.4
(-1.9)
A 		8.1
(-3)
A 		16.4
(-1.2)
A 		36.1
(3)
P 		10.3
(-2.5)
A 		28
B 12.9
(-2.1)
A 		12.6
(-2.1)
A 		14.3
(-1.7)
A 		8.8
(-3)
A 		35.1
(3)
P 		22.3
(0.1)
P 		26
C 9.8
(-2.2)
A 		16.2
(-0.3)
A 		7.2
(-3)
A 		8.4
(-2.6)
A 		22.9
(1.7)
P 		27.1
(3)
P 		20
avr 11.9
(-2.4) 		14.1
(-1.8) 		9.9
(-3) 		11.2
(-2.6) 		31.4
(3) 		19.9
(-0.2) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13950
Sequence Type Exemplar sequence
Representative Public ID C47E8.1 NCBI
Target Description C47E8.1 /REP_DB=WormBase Gene ID /WP=CE05437 /TR=Q18686 /GB=CAA99791.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074222(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074222 NCBI Caenorhabditis elegans C47E8.1 (C47E8.1) mRNA, complete cds. 10/11 None
GENEFINDER00000005843 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14668692:14669694:1 10/11 None
C47E8.1 ENSEMBL cdna:known chromosome:CEL140:V:14668692:14669694:1 gene:C47E8.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005830 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14668691-14669732(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47E8.1
Entrez Gene 183550 Entrez gene
SwissProt Q18686 EMBL-EBI
WormBase CE35837 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99791 Hypothetical protein C47E8.1 [Caenorhabditis elegans] ref|NP_506623.2| C47E8.1 [Caenorhabditis elegans] 1.0E-107
blast CAE60854 Hypothetical protein CBG04563 [Caenorhabditis briggsae] 3.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506623.2 1 43-65
C47E8.1 1 43-65
GENEFINDER00000005843 1 43-65
Sequence
Target Sequence 
>C. ELEGANS:178660_AT
aaaagcctctatgtctttcttacaaaaaaaacagactcggccgacacatttcagggattc
agtgacaagtacaacttcaccgcttctgtgctttgtatgctaacttttggattcggagca
atcttactttccactgccccaatgtttattactggtctcatctctacagtttggatgatt
gcgtgcttcagatggcttaatcttcatggtccaaaaatgactagaaatgaggtgatcttc
ttcgaggccagcaaccttctcgagttggatcctccagtattccgttttggaatgactgca
aacgttgatgactgtctgacaccgggagacggtgaacaacgagagccaccacagcctcaa
actctctgggatgcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCCTCTATGTCTTTCTTACAA 651 131 91 Antisense
ACTCGGCCGACACATTTCAGGGATT 50 101 125 Antisense
TGACAAGTACAACTTCACCGCTTCT 198 571 153 Antisense
ACCGCTTCTGTGCTTTGTATGCTAA 295 89 169 Antisense
TCGGAGCAATCTTACTTTCCACTGC 563 605 203 Antisense
GTTTATTACTGGTCTCATCTCTACA 452 449 234 Antisense
GATGATTGCGTGCTTCAGATGGCTT 447 409 264 Antisense
AAATGAGGTGATCTTCTTCGAGGCC 663 119 315 Antisense
AGCAACCTTCTCGAGTTGGATCCTC 647 75 340 Antisense
GATCCTCCAGTATTCCGTTTTGGAA 530 415 358 Antisense
AGCCTCAAACTCTCTGGGATGCGCT 383 83 443 Antisense
Sequence Source Affymetrix Proprietary Database