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[178659_at]

Description R05D7.5 /REP_DB=WormBase Gene ID /WP=CE16298 /TR=O45708 /GB=CAB03218.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 184.3
(1.3)
A 		163.7
(0.3)
A 		94.4
(-3)
A 		219.5
(3)
P 		125
B 156.5
(-0.3)
P 		68.9
(-2.1)
A 		27.6
(-3)
A 		314.1
(3)
P 		287
C 128.7
(-0.2)
A 		71.4
(-3)
A 		98
(-1.7)
A 		194
(3)
P 		123
avr 156.5
(-0) 		101.3
(-2) 		73.3
(-3) 		242.5
(3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 213.9
(3)
P 		181.3
(0.6)
P 		131.7
(-3)
A 		143.4
(-2.1)
A 		153.1
(-1.4)
M 		192.4
(1.4)
P 		82
B 269.4
(3)
M 		183.6
(-2.4)
M 		191.5
(-1.9)
P 		174
(-3)
A 		212.4
(-0.6)
P 		185.6
(-2.3)
P 		95
C 222.7
(3)
P 		169.6
(0.2)
P 		164.6
(-0)
A 		107
(-3)
A 		184.8
(1)
P 		186.7
(1.1)
P 		116
avr 235.3
(3) 		178.2
(-0.7) 		162.6
(-1.7) 		141.5
(-3) 		183.4
(-0.3) 		188.2
(-0) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 67.1
(3)
A 		35.5
(-1.5)
A 		24.7
(-3)
A 		32.1
(-2)
P 		42
B 49.9
(1.3)
P 		17
(-1.9)
A 		6.4
(-3)
A 		66.9
(3)
P 		61
C 42.6
(3)
A 		20.5
(-3)
A 		34.2
(0.7)
A 		32.7
(0.3)
P 		22
avr 53.2
(3) 		24.3
(-2.5) 		21.8
(-3) 		43.9
(1.2) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 39.4
(-1.2)
P 		64.5
(3)
P 		28.7
(-3)
A 		36.4
(-1.7)
A 		46.2
(-0.1)
M 		46.8
(0)
P 		36
B 93.7
(3)
M 		61.1
(-1.1)
M 		46.5
(-2.9)
P 		46.1
(-3)
A 		86.3
(2.1)
P 		69.2
(-0.1)
P 		48
C 82.5
(3)
P 		51.8
(-0)
P 		41.9
(-1)
A 		21.5
(-3)
A 		59.8
(0.8)
P 		62.5
(1)
P 		61
avr 71.9
(3) 		59.1
(0.9) 		39
(-2.3) 		34.7
(-3) 		64.1
(1.7) 		59.5
(1) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.367
Sequence Type Exemplar sequence
Representative Public ID R05D7.5 NCBI
Target Description R05D7.5 /REP_DB=WormBase Gene ID /WP=CE16298 /TR=O45708 /GB=CAB03218.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060677 NCBI Caenorhabditis elegans R05D7.5 (R05D7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000020583 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12191810:12196864:1 11/11 None
R05D7.5 ENSEMBL cdna:known chromosome:CEL140:I:12191810:12196864:1 gene:R05D7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12191740-12196795(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05D7.5
Entrez Gene 173097 Entrez gene
SwissProt O45708 EMBL-EBI
WormBase CE34492 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03218 Hypothetical protein R05D7.5 [Caenorhabditis elegans] ref|NP_493078.2| R05D7.5 [Caenorhabditis elegans] 0.0
blast CAB03218 Hypothetical protein R05D7.5 [Caenorhabditis elegans] ref|NP_493078.2| R05D7.5 [Caenorhabditis elegans] 1.0E-156
blast CAE72991 Hypothetical protein CBG20336 [Caenorhabditis briggsae] 1.0E-141
blast CAE72991 Hypothetical protein CBG20336 [Caenorhabditis briggsae] 1.0E-136
Sequence
Target Sequence 
>C. ELEGANS:178659_AT
tacaatggaattctggaccgcccgttttactcggcgttctcctactcgaagcccatcatt
ccaccaactgccattattccgttgaatcgtccgttgcaacgtggcaataatattccacag
ctacagtacattgcgttgtgggcaccacgtggccaacctccacactgggggtccatacac
caaaatgcgatgggaaaattggatggaagtttcataaaagaccgtcgaatctataattta
tcgtctccggatatgcaaaatacgcctgtgcggctcgtacaatacgtcggcaatgaacag
gaaaataatttcaaatttgcatggacgaaggcgatcgacgttgatatggctactgtagtt
tctgagaaggattatacgaaacagtgcagtccgaaaatggcgccggcggttttacaggat
cacggatacgaatttctcggcgaggcggatatcgataatcgaatcatgtactatgtggat
cacaattatgtaaatactgtatcagggagcctcttcacaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAATGGAATTCTGGACCGCCCGT 534 637 481 Antisense
GAATCGTCCGTTGCAACGTGGCAAT 269 329 564 Antisense
ATTCCACAGCTACAGTACATTGCGT 550 5 592 Antisense
CATTGCGTTGTGGGCACCACGTGGC 663 215 609 Antisense
CACACTGGGGGTCCATACACCAAAA 547 117 641 Antisense
TGCAAAATACGCCTGTGCGGCTCGT 698 575 734 Antisense
TGCGGCTCGTACAATACGTCGGCAA 518 581 749 Antisense
ACAGTGCAGTCCGAAAATGGCGCCG 656 107 861 Antisense
AATGGCGCCGGCGGTTTTACAGGAT 690 121 876 Antisense
GGATACGAATTTCTCGGCGAGGCGG 296 501 904 Antisense
GTATCAGGGAGCCTCTTCACAAACA 355 445 979 Antisense
Sequence Source Affymetrix Proprietary Database