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[178658_at]

Description C08E8.1 /REP_DB=WormBase Gene ID /WP=CE17375 /TR=O62039 /GB=CAB03856.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 38      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 61.5
(3)
P 		19.1
(-1.8)
A 		9
(-3)
A 		21
(-1.6)
A 		53
B 109.6
(3)
P 		33.1
(-1.3)
P 		13.8
(-2.4)
A 		3.7
(-3)
A 		106
C 94
(3)
P 		22.7
(-1.7)
A 		3.9
(-3)
A 		71.3
(1.5)
P 		90
avr 88.4
(3) 		25
(-1.8) 		8.9
(-3) 		32
(-1.3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 115.4
(1.1)
P 		97.6
(0.4)
P 		161.1
(3)
P 		56.2
(-1.4)
P 		43.8
(-1.9)
P 		17
(-3)
A 		144
B 139.3
(3)
P 		126.5
(2.3)
P 		111.3
(1.6)
P 		35.9
(-2.3)
P 		48.7
(-1.6)
P 		21.6
(-3)
A 		118
C 147.7
(3)
P 		137.2
(2.6)
P 		84.7
(0.4)
P 		50.7
(-1)
A 		29.4
(-1.9)
A 		3
(-3)
A 		145
avr 134.1
(3) 		120.4
(2.3) 		119
(2.2) 		47.6
(-1.3) 		40.6
(-1.7) 		13.9
(-3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 22.4
(3)
P 		4.1
(-2.5)
A 		2.3
(-3)
A 		3.1
(-2.8)
A 		20
B 34.9
(3)
P 		8.2
(-1.7)
P 		3.2
(-2.6)
A 		0.8
(-3)
A 		34
C 31.1
(3)
P 		6.5
(-2)
A 		1.4
(-3)
A 		12
(-0.9)
P 		30
avr 29.5
(3) 		6.3
(-2.1) 		2.3
(-3) 		5.3
(-2.3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 21.3
(0.3)
P 		34.7
(2.9)
P 		35.1
(3)
P 		14.2
(-1)
P 		13.2
(-1.2)
P 		4.1
(-3)
A 		31
B 48.5
(3)
P 		42.1
(2.1)
P 		27
(-0.2)
P 		9.5
(-2.8)
P 		19.8
(-1.3)
P 		8
(-3)
A 		41
C 54.7
(3)
P 		41.9
(1.6)
P 		21.6
(-0.7)
P 		10.2
(-2)
A 		9.5
(-2.1)
A 		1
(-3)
A 		54
avr 41.5
(3) 		39.6
(2.7) 		27.9
(0.8) 		11.3
(-1.9) 		14.2
(-1.4) 		4.4
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12831
Sequence Type Exemplar sequence
Representative Public ID C08E8.1 NCBI
Target Description C08E8.1 /REP_DB=WormBase Gene ID /WP=CE17375 /TR=O62039 /GB=CAB03856.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075190 NCBI Caenorhabditis elegans C08E8.1 (C08E8.1) mRNA, complete cds. 11/11 None
C08E8.1 ENSEMBL cdna:known chromosome:CEL140:V:18363493:18365068:-1 gene:C08E8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C08E8.1
Entrez Gene 182406 Entrez gene
SwissProt O62039 EMBL-EBI
WormBase CE17375 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03856 Hypothetical protein C08E8.1 [Caenorhabditis elegans] ref|NP_507591.1| C08E8.1 [Caenorhabditis elegans] 7.0E-68
blast CAA21549 Hypothetical protein Y41C4A.11 [Caenorhabditis elegans] ref|NP_499518.1| Y41C4A.11 [Caenorhabditis elegans] 9.0E-32
blast AAK84589 Hypothetical protein Y22D7AL.15 [Caenorhabditis elegans] ref|NP_497438.2| Y22D7AL.15 [Caenorhabditis elegans] 8.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507591.1 2 52-74,100-122
C08E8.1 2 52-74,100-122
Sequence
Target Sequence 
>C. ELEGANS:178658_AT
aagactttcaaattcctcatgtaataaaaccggtgaaatctgcaccgtatgttgttaaag
aaaccccattgaaaacctcgtttctgacatattgcccaacttgtgagaaagcctacatga
cgtcagtaaatacacatattggagtgtgttggtggcttatttgtttcttcggaactgttc
tatgctgcttcccatttctattttttctttgctgtgatgtctcaaaagatgtgaatcata
attgtccgagttgtgggatgttactggcaaaaaaaaatcgggctgggttcaaaatttccg
tgtttttctaccctggtcagtcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTTTCAAATTCCTCATGTAAT 573 153 26 Antisense
GAAATCTGCACCGTATGTTGTTAAA 313 363 60 Antisense
AAACCTCGTTTCTGACATATTGCCC 309 117 98 Antisense
GACATATTGCCCAACTTGTGAGAAA 66 371 111 Antisense
GAGAAAGCCTACATGACGTCAGTAA 191 393 130 Antisense
CATATTGGAGTGTGTTGGTGGCTTA 59 215 160 Antisense
TCGGAACTGTTCTATGCTGCTTCCC 193 607 194 Antisense
ATTTTTTCTTTGCTGTGATGTCTCA 394 15 225 Antisense
GATGTGAATCATAATTGTCCGAGTT 272 409 253 Antisense
GTCCGAGTTGTGGGATGTTACTGGC 435 475 269 Antisense
GTTTTTCTACCCTGGTCAGTCAATT 666 445 327 Antisense
Sequence Source Affymetrix Proprietary Database