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[178657_at]

Description C34B7.1 /REP_DB=WormBase Gene ID /WP=CE27817 /TR=P90769 /GB=CAB05700.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 55      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 115.9
(3)
P 		109.8
(2.5)
M 		92.9
(1.3)
P 		35.9
(-3)
A 		80
B 132
(3)
P 		96.1
(-3)
A 		98.8
(-2.5)
A 		128.5
(2.4)
M 		36
C 94.7
(-2.1)
P 		90.5
(-3)
A 		103.7
(-0.2)
P 		119
(3)
A 		29
avr 114.2
(3) 		98.8
(-1.7) 		98.5
(-1.8) 		94.5
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 73.7
(1.2)
A 		80
(1.8)
A 		79.4
(1.7)
A 		77.7
(1.6)
P 		26.8
(-3)
A 		93.3
(3)
A 		67
B 66.4
(1.9)
A 		69.8
(3)
A 		58
(-0.9)
A 		65.3
(1.5)
A 		51.5
(-3)
A 		51.7
(-2.9)
A 		18
C 89.9
(0.4)
P 		119.2
(3)
P 		100
(1.3)
P 		52.7
(-3)
A 		68.9
(-1.5)
P 		72.8
(-1.2)
A 		67
avr 76.7
(1.1) 		89.7
(3) 		79.1
(1.4) 		65.2
(-0.6) 		49.1
(-3) 		72.6
(0.5) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 42.2
(3)
P 		23.8
(0)
M 		24.3
(0.1)
P 		5.3
(-3)
A 		37
B 42.1
(3)
P 		23.7
(-2.8)
A 		22.9
(-3)
A 		27.4
(-1.6)
M 		19
C 31.4
(1.2)
P 		26
(-0.8)
A 		36.1
(3)
P 		20.1
(-3)
A 		16
avr 38.6
(3) 		24.5
(-1) 		27.8
(-0.1) 		17.6
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.6
(-1.4)
A 		28.5
(3)
A 		17.3
(-0.3)
A 		19.7
(0.4)
P 		8.1
(-3)
A 		22.7
(1.3)
A 		20
B 23.1
(2.9)
A 		23.2
(3)
A 		14.1
(-3)
A 		17.3
(-0.9)
A 		20.9
(1.5)
A 		19.3
(0.4)
A 		9
C 33.3
(2.3)
P 		36.4
(3)
P 		25.4
(0.4)
P 		10.6
(-3)
A 		22.3
(-0.3)
P 		24.4
(0.2)
A 		26
avr 23.3
(0.3) 		29.4
(3) 		18.9
(-1.7) 		15.9
(-3) 		17.1
(-2.5) 		22.1
(-0.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178657_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.430
Sequence Type Exemplar sequence
Representative Public ID C34B7.1 NCBI
Target Description C34B7.1 /REP_DB=WormBase Gene ID /WP=CE27817 /TR=P90769 /GB=CAB05700.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059864 NCBI Caenorhabditis elegans C34B7.4 (C34B7.4) mRNA, complete cds. 11/11 None
SNAP00000044467 ENSEMBL cdna:SNAP chromosome:CEL140:I:8338738:8349805:1 11/11 None
GENEFINDER00000044470 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8338738:8344715:1 11/11 None
C34B7.4 ENSEMBL cdna:known chromosome:CEL140:I:8341322:8344145:1 gene:C34B7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059264 1/11 Cross Hyb Matching Probes None
T19B4.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8339051-8344076(+) 99.31 100.0
Public Domain and Genome References
Gene Title
Ensembl C34B7.4
Entrez Gene 183194 Entrez gene
SwissProt Q95ZX6 EMBL-EBI
WormBase CE27818 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC42264 Hypothetical protein C34B7.4 [Caenorhabditis elegans] ref|NP_492265.1| C34B7.4 [Caenorhabditis elegans] 0.0
blast CAE60467 Hypothetical protein CBG04078 [Caenorhabditis briggsae] 0.0
blast CAB05701 Hypothetical protein C34B7.2 [Caenorhabditis elegans] ref|NP_492266.2| C34B7.2 [Caenorhabditis elegans] 0.0
blast CAE60466 Hypothetical protein CBG04077 [Caenorhabditis briggsae] 0.0
blast CAB05700 Hypothetical protein C34B7.1 [Caenorhabditis elegans] ref|NP_492264.1| C34B7.1 [Caenorhabditis elegans] 0.0
blast CAE60468 Hypothetical protein CBG04079 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002717 EMBL-EBI MOZ/SAS-like protein 2.9E-78
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 1.0E-126
Pfam IPR002717 EMBL-EBI MOZ/SAS-like protein 2.9E-78
Pfam IPR002717 EMBL-EBI MOZ/SAS-like protein 2.9E-78
Sequence
Target Sequence 
>C. ELEGANS:178657_AT
gtactgtcaggatttgtgtcttatttcaaagttatttattgcatcaaagacactttacga
tgaagttgaaacatttaaattctatgttctatgcgaaattacaacggaaggatatgtgat
tgttggatatttttcaaaagagaagaacccatcgaaaaacaataatttgtcatgtctttt
ggtacttccaatggttcaaaaaatgggttacggtcgtcttctaatcgatatgagctatga
actttctcgtttggaaatgagaattggacatcccgagcatccactatcagatcttggaat
tttggcatatcgtggatattggcgttcaagtcttctatgttatattcgggagcatcggaa
ttatgatcgacttaatattaaagatatgtgtctagcaacaaggattgctccagtcgatat
agtaaatcaattaatgttggataatatgattgtactcaaaggaggcgtttactcaattaa
aattggcaaacgagcactgaaattcccactttctcaatgtcgccgtcgatttgtagatcc
ttctcaacttttttggaaaccgaagccatcggccgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTGTCAGGATTTGTGTCTTATT 606 457 2457 Antisense
TTTGTCATGTCTTTTGGTACTTCCA 67 665 2622 Antisense
TGGGTTACGGTCGTCTTCTAATCGA 447 551 2660 Antisense
TGAGAATTGGACATCCCGAGCATCC 478 569 2714 Antisense
CCGAGCATCCACTATCAGATCTTGG 99 265 2729 Antisense
GGATATTGGCGTTCAAGTCTTCTAT 100 511 2770 Antisense
AAGGATTGCTCCAGTCGATATAGTA 28 161 2856 Antisense
GCACTGAAATTCCCACTTTCTCAAT 138 317 2950 Antisense
TTTCTCAATGTCGCCGTCGATTTGT 553 671 2966 Antisense
GTCGATTTGTAGATCCTTCTCAACT 451 473 2981 Antisense
TGGAAACCGAAGCCATCGGCCGAAC 652 547 3010 Antisense
Sequence Source Affymetrix Proprietary Database