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[178656_at]

Description F36D1.6 /REP_DB=WormBase Gene ID /WP=CE18667 /TR=Q9XV38 /GB=CAB04309.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 16      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 1.7
(-3)
A 		2.5
(-2.7)
A 		16.7
(3)
A 		7.5
(-0.7)
A 		15
B 4.3
(2)
A 		4.8
(3)
A 		3.2
(-0.1)
A 		1.7
(-3)
A 		3
C 2.1
(-3)
A 		6.5
(-2)
A 		3.7
(-2.6)
A 		28.2
(3)
A 		26
avr 2.7
(-3) 		4.6
(-1.8) 		7.9
(0.2) 		12.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.4
(-2.5)
A 		1.8
(-3)
A 		3
(-2.6)
A 		1.7
(-3)
A 		2.4
(-2.8)
A 		22
(3)
A 		20
B 2.6
(-2.8)
A 		2.6
(-2.8)
A 		2.4
(-2.9)
A 		2.4
(-2.9)
A 		2.2
(-3)
A 		17.5
(3)
A 		15
C 2.7
(-2.7)
A 		2.2
(-2.8)
A 		1.6
(-3)
A 		15.3
(0.8)
A 		1.7
(-3)
A 		23.2
(3)
A 		22
avr 2.9
(-2.7) 		2.2
(-3) 		2.3
(-2.9) 		6.5
(-1.6) 		2.1
(-3) 		20.9
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.6
(-2.8)
A 		0.5
(-3)
A 		4.4
(3)
A 		1.1
(-2.1)
A 		4
B 1.4
(3)
A 		1.2
(1.8)
A 		0.7
(-1.2)
A 		0.4
(-3)
A 		1
C 0.7
(-3)
A 		1.9
(-1.2)
A 		1.3
(-2.1)
A 		4.8
(3)
A 		4
avr 0.9
(-3) 		1.2
(-1.5) 		2.1
(3) 		2.1
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-2.8)
A 		0.6
(-2.8)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		0.7
(-2.6)
A 		5.4
(3)
A 		5
B 0.9
(-2.7)
A 		0.9
(-2.7)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.9
(-2.7)
A 		6.5
(3)
A 		6
C 1
(-2.5)
A 		0.7
(-2.8)
A 		0.4
(-3)
A 		3.1
(-0.8)
A 		0.6
(-2.8)
A 		7.8
(3)
A 		7
avr 0.8
(-2.7) 		0.7
(-2.8) 		0.5
(-3) 		1.4
(-2.1) 		0.7
(-2.8) 		6.6
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1644
Sequence Type Exemplar sequence
Representative Public ID F36D1.6 NCBI
Target Description F36D1.6 /REP_DB=WormBase Gene ID /WP=CE18667 /TR=Q9XV38 /GB=CAB04309.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060493 NCBI Caenorhabditis elegans F36D1.6 (F36D1.6) mRNA, complete cds. 11/11 None
GENEFINDER00000013627 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11278101:11279350:-1 11/11 None
F36D1.6 ENSEMBL cdna:known chromosome:CEL140:I:11278306:11279350:-1 gene:F36D1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013622 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11278236-11279281(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D1.6
Entrez Gene 185348 Entrez gene
SwissProt Q9XV38 EMBL-EBI
WormBase CE34306 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04309 Hypothetical protein F36D1.6 [Caenorhabditis elegans] ref|NP_492894.2| F36D1.6 [Caenorhabditis elegans] 1.0E-154
blast CAB04309 Hypothetical protein F36D1.6 [Caenorhabditis elegans] ref|NP_492894.2| F36D1.6 [Caenorhabditis elegans] 1.0E-149
blast CAE67999 Hypothetical protein CBG13609 [Caenorhabditis briggsae] 6.0E-19
blast CAE67999 Hypothetical protein CBG13609 [Caenorhabditis briggsae] 7.0E-19
blast CAE67998 Hypothetical protein CBG13608 [Caenorhabditis briggsae] 8.0E-19
blast CAE67998 Hypothetical protein CBG13608 [Caenorhabditis briggsae] 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 5.4E-93
Sequence
Target Sequence 
>C. ELEGANS:178656_AT
aaagacatgttcttactacttcccgagttgtcatgtcaagtaagagaaaatggagggcta
ataatcaatcggtagactgtaaaggtgacttgaaatacgtcgaggttccagcaggatttc
tggaaaaaaacatgtttagacgttttcaatgtgtaatgaacgggaccgactgccatgata
tagctactcctgtgaaagcttatattttgaactactgcccgaacatgacagagcatgtgg
cctatcatccaatgattatcgagtttgatgacactttcacgaacagtacaccttgtctat
cagatgaagttaatattggtaatggggtttatgtgcatggttatgaagacaatggtaatg
ggaaaaataacggcgttggattgaagcatcgacttctttgggtaatagacttacaagaga
aactagtcattactgaaagctttcatggggaatatgagtttggaagccctttatccagag
tgattggcagaaaatggacaattgttgggctgggtacaacttatatggatttcacttcta
atgtgttcttccgcaggtctgaaggcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGACATGTTCTTACTACTTCCCG 650 121 320 Antisense
ACTACTTCCCGAGTTGTCATGTCAA 201 101 334 Antisense
AATACGTCGAGGTTCCAGCAGGATT 631 169 413 Antisense
GTAATGAACGGGACCGACTGCCATG 409 463 472 Antisense
GACTGCCATGATATAGCTACTCCTG 279 375 487 Antisense
TTTGAACTACTGCCCGAACATGACA 708 663 525 Antisense
GACAGAGCATGTGGCCTATCATCCA 424 367 546 Antisense
CTTTCACGAACAGTACACCTTGTCT 121 223 593 Antisense
GGAAGCCCTTTATCCAGAGTGATTG 400 531 781 Antisense
TTCACTTCTAATGTGTTCTTCCGCA 311 687 850 Antisense
GTTCTTCCGCAGGTCTGAAGGCTTG 122 445 864 Antisense
Sequence Source Affymetrix Proprietary Database