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[178655_at]

Description T08G3.8 /REP_DB=WormBase Gene ID /WP=CE18939 /TR=Q9XU50 /GB=CAB05797.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 17      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 38.3
(-3)
A 		56.7
(-2.2)
A 		97.1
(-0.4)
A 		172
(3)
A 		134
B 54.6
(-3)
A 		106
(1.6)
A 		90.8
(0.2)
A 		122
(3)
M 		67
C 57.2
(-2.1)
A 		89.6
(-0.7)
A 		35.1
(-3)
A 		176.2
(3)
P 		141
avr 50
(-3) 		84.1
(-1.1) 		74.3
(-1.6) 		156.7
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 16.2
(-3)
A 		29.4
(-1.7)
A 		64.6
(1.7)
A 		38.5
(-0.8)
A 		78.1
(3)
A 		63.1
(1.5)
A 		62
B 61.8
(1)
A 		90.4
(3)
A 		45.4
(-0.2)
A 		48.6
(0)
A 		5.7
(-3)
A 		44.5
(-0.3)
A 		85
C 45.5
(0.1)
A 		54.5
(0.9)
A 		77.5
(3)
A 		12
(-3)
A 		54.5
(0.9)
A 		63.2
(1.7)
A 		66
avr 41.2
(-1.3) 		58.1
(2.1) 		62.5
(3) 		33
(-3) 		46.1
(-0.3) 		56.9
(1.9) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.9
(-2.3)
A 		12.3
(-3)
A 		25.4
(3)
A 		25.2
(2.9)
A 		13
B 17.4
(-3)
A 		26.2
(3)
A 		21
(-0.5)
A 		26
(2.9)
M 		9
C 18.9
(-0.7)
A 		25.8
(1.7)
A 		12.2
(-3)
A 		29.7
(3)
P 		18
avr 16.7
(-3) 		21.4
(-0.3) 		19.5
(-1.4) 		27
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3
(-3)
A 		10.4
(-0.8)
A 		14.1
(0.2)
A 		9.8
(-1)
A 		23.6
(3)
A 		15.4
(0.6)
A 		21
B 21.5
(1.1)
A 		30.1
(3)
A 		11
(-1.1)
A 		12.9
(-0.7)
A 		2.3
(-3)
A 		16.6
(0.1)
A 		28
C 16.8
(1.6)
A 		16.6
(1.6)
A 		19.7
(2.6)
A 		2.4
(-3)
A 		17.6
(1.9)
A 		21.1
(3)
A 		19
avr 13.8
(0.1) 		19
(3) 		14.9
(0.7) 		8.4
(-3) 		14.5
(0.5) 		17.7
(2.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13836
Sequence Type Exemplar sequence
Representative Public ID T08G3.8 NCBI
Target Description T08G3.8 /REP_DB=WormBase Gene ID /WP=CE18939 /TR=Q9XU50 /GB=CAB05797.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074764 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-44) (sru-44) mRNA, complete cds. 11/11 None
SNAP00000031137 ENSEMBL cdna:SNAP chromosome:CEL140:V:16469048:16473520:-1 11/11 None
GENEFINDER00000031144 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16469048:16470522:-1 11/11 None
T08G3.8 ENSEMBL cdna:known chromosome:CEL140:V:16469048:16470522:-1 gene:T08G3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16469047-16470522(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-44
Ensembl T08G3.8
Entrez Gene 188299 Entrez gene
SwissProt Q9XU50 EMBL-EBI
WormBase CE18939 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE11318 Hypothetical protein T08G3.12 [Caenorhabditis elegans] ref|NP_001024122.1| Serpentine Receptor, class H family member (srh-138) [Caenorhabditis elegans] 1.0E-164
blast CAB05797 Hypothetical protein T08G3.8 [Caenorhabditis elegans] ref|NP_507165.1| Serpentine Receptor, class U family member (sru-44) [Caenorhabditis elegans] 1.0E-135
blast CAB05797 Hypothetical protein T08G3.8 [Caenorhabditis elegans] ref|NP_507165.1| Serpentine Receptor, class U family member (sru-44) [Caenorhabditis elegans] 1.0E-132
blast CAB16538 Hypothetical protein Y70C5C.4 [Caenorhabditis elegans] ref|NP_507229.1| Serpentine Receptor, class H family member (srh-137) [Caenorhabditis elegans] 9.0E-84
blast CAA15967 Hypothetical protein Y6E2A.6 [Caenorhabditis elegans] ref|NP_506913.1| Serpentine Receptor, class H family member (srh-140) [Caenorhabditis elegans] 2.0E-73
blast CAE11314 Hypothetical protein Y32B12B.7 [Caenorhabditis elegans] ref|NP_001024223.1| Serpentine Receptor, class U family member (sru-45) [Caenorhabditis elegans] 2.0E-46
blast CAE11314 Hypothetical protein Y32B12B.7 [Caenorhabditis elegans] ref|NP_001024223.1| Serpentine Receptor, class U family member (sru-45) [Caenorhabditis elegans] 2.0E-44
blast T21293 hypothetical protein F23B12.2 - Caenorhabditis elegans 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507165.1 7 15-33,54-76,104-126,139-161,194-216,241-263,273-295
T08G3.8 7 15-33,54-76,104-126,139-161,194-216,241-263,273-295
SNAP00000031137 10 27-49,69-91,112-131,170-192,213-235,250-272,300-322,355-377,402-424,434-456
GENEFINDER00000031144 7 15-37,58-80,100-122,156-178,211-233,258-280,290-312
Sequence
Target Sequence 
>C. ELEGANS:178655_AT
taaaatcccttcacgtcatcatatttccgctactcatagcttttgcattcatactggcac
ttccaagatatttctcagaaggtgaatgcactccactcggagccccatttcctcatggtg
caatgattatttcaagaggagcacatgatgataatgatagtgaaacgcatttatatacaa
taattgagttgacaatgaaaccgctgactgtggcgctggttattttatcgaatgttttca
tggtctggaaacttcgaagcaataagaaatcaaacaacacaataatgaaaaagaaaaaga
cgaacgccgaacgagtgctcactgcgacaatgatattaatacttttaccattattggtca
acgtcatcattgctctgttcgagtattcgggttcattcgacagcatatttttcattattc
gatcgatatgcattgatgctcaggcccatattataacatgttatttttatttgtcccgat
ctgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAATCCCTTCACGTCATCATATT 223 639 422 Antisense
TCATCATATTTCCGCTACTCATAGC 388 621 437 Antisense
GCATTCATACTGGCACTTCCAAGAT 350 307 466 Antisense
AGAAGGTGAATGCACTCCACTCGGA 481 75 498 Antisense
TGAAACCGCTGACTGTGGCGCTGGT 569 571 617 Antisense
AAGACGAACGCCGAACGAGTGCTCA 403 151 718 Antisense
ACGAGTGCTCACTGCGACAATGATA 632 93 732 Antisense
CAACGTCATCATTGCTCTGTTCGAG 421 187 780 Antisense
GTATTCGGGTTCATTCGACAGCATA 138 453 804 Antisense
GCATTGATGCTCAGGCCCATATTAT 337 307 851 Antisense
TATTTTTATTTGTCCCGATCTGCTG 413 661 883 Antisense
Sequence Source Affymetrix Proprietary Database