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[178653_at]

Description W06B3.1 /REP_DB=WormBase Gene ID /WP=CE19007 /TR=Q9XXM2 /GB=CAA18360.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 14      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 93
(-1)
P 		99.3
(-0.3)
A 		73.9
(-3)
A 		131.2
(3)
P 		57
B 109
(3)
P 		83.1
(-0.4)
A 		63.8
(-3)
A 		104.4
(2.4)
P 		45
C 100.3
(2.1)
P 		45.4
(-3)
A 		78.6
(0.1)
M 		109.9
(3)
P 		65
avr 100.8
(1) 		75.9
(-2.5) 		72.1
(-3) 		115.2
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 113.9
(3)
M 		104.7
(2.3)
P 		83.5
(0.8)
P 		75.1
(0.2)
A 		74.8
(0.2)
A 		31.5
(-3)
A 		82
B 137.7
(3)
P 		101.8
(0.6)
P 		98.6
(0.4)
A 		61.4
(-2.1)
A 		81.1
(-0.8)
A 		48.1
(-3)
A 		90
C 119.5
(0.2)
P 		183.3
(3)
P 		77.3
(-1.6)
A 		130.3
(0.7)
P 		70
(-1.9)
A 		44.6
(-3)
A 		139
avr 123.7
(2.6) 		129.9
(3) 		86.5
(0.1) 		88.9
(0.2) 		75.3
(-0.7) 		41.4
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 33.8
(3)
P 		21.5
(-2.1)
A 		19.3
(-3)
A 		19.2
(-3)
P 		15
B 34.8
(3)
P 		20.5
(-1.3)
A 		14.8
(-3)
A 		22.2
(-0.8)
P 		20
C 33.2
(3)
P 		13.1
(-3)
A 		27.4
(1.3)
M 		18.5
(-1.4)
P 		20
avr 33.9
(3) 		18.4
(-3) 		20.5
(-2.2) 		20
(-2.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 21
(-0.3)
M 		37.2
(3)
P 		18.2
(-0.9)
P 		19
(-0.7)
A 		22.6
(0)
A 		7.7
(-3)
A 		30
B 47.9
(3)
P 		33.9
(0.3)
P 		23.9
(-1.6)
A 		16.3
(-3)
A 		33
(0.2)
A 		17.9
(-2.7)
A 		32
C 44.3
(1.3)
P 		55.9
(3)
P 		19.7
(-2.3)
A 		26.2
(-1.3)
P 		22.6
(-1.9)
A 		14.9
(-3)
A 		41
avr 37.7
(2) 		42.3
(3) 		20.6
(-1.5) 		20.5
(-1.5) 		26.1
(-0.4) 		13.5
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178653_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16991
Sequence Type Exemplar sequence
Representative Public ID W06B3.1 NCBI
Target Description W06B3.1 /REP_DB=WormBase Gene ID /WP=CE19007 /TR=Q9XXM2 /GB=CAA18360.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077609(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077609 NCBI Caenorhabditis elegans W06B3.1 (W06B3.1) mRNA, complete cds. 11/11 None
GENEFINDER00000035065 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12014317:12016097:-1 11/11 None
W06B3.1 ENSEMBL cdna:known chromosome:CEL140:X:12014317:12016097:-1 gene:W06B3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035062 8/11 Cross Hyb Matching Probes None
SNAP00000035063 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12014316-12016097(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06B3.1
Entrez Gene 189236 Entrez gene
SwissProt Q9XXM2 EMBL-EBI
WormBase CE35635 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248053_AT nicotinamide-nucleotide adenylyltransferase, putative / NAD(+) pyrophosphorylase, putative at
CANINE:1590982_AT similar to Nicotinamide mononucleotide adenylyltransferase 3 (NMN adenylyltransferase 3) cfa
CANINE_2:CFA.7254.1.A1_AT similar to Nicotinamide mononucleotide adenylyltransferase 3 (NMN adenylyltransferase 3) cfa
CANINE_2:CFAAFFX.12278.1.S1_AT similar to Nicotinamide mononucleotide adenylyltransferase 3 (NMN adenylyltransferase 3) cfa
CANINE_2:CFAAFFX.12278.1.S1_S_AT similar to Nicotinamide mononucleotide adenylyltransferase 3 (NMN adenylyltransferase 3) cfa
CANINE_2:CFAAFFX.12279.1.S1_AT similar to Nicotinamide mononucleotide adenylyltransferase 3 (NMN adenylyltransferase 3) cfa
CANINE_2:CFAAFFX.12280.1.S1_AT similar to Nicotinamide mononucleotide adenylyltransferase 3 (NMN adenylyltransferase 3) cfa
CHICKEN:GGA.11021.1.S1_S_AT similar to RIKEN cDNA 4933408N02 gga
CHICKEN:GGAAFFX.3324.1.S1_AT similar to RIKEN cDNA 4933408N02 gga
HU35KSUBA:RC_AA232215_AT nicotinamide nucleotide adenylyltransferase 3 hs
U133_X3P:HS.14600.0.S1_3P_AT nicotinamide nucleotide adenylyltransferase 3 hs
U133_X3P:HS.130246.0.A1_3P_X_AT nicotinamide nucleotide adenylyltransferase 3 hs
U133_X3P:HS.130246.0.A1_3P_AT nicotinamide nucleotide adenylyltransferase 3 hs
HG-U133_PLUS_2:228090_AT nicotinamide nucleotide adenylyltransferase 3 hs
HG-U133B:228090_AT nicotinamide nucleotide adenylyltransferase 3 hs
HG-U133_PLUS_2:243738_AT nicotinamide nucleotide adenylyltransferase 3 hs
HG-U133B:243738_AT nicotinamide nucleotide adenylyltransferase 3 hs
HG-U95B:58237_AT nicotinamide nucleotide adenylyltransferase 3 hs
HG-U95D:77748_AT nicotinamide nucleotide adenylyltransferase 3 hs
MOUSE430A_2:1424899_AT nicotinamide nucleotide adenylyltransferase 3 mm
MOUSE430_2:1424899_AT nicotinamide nucleotide adenylyltransferase 3 mm
MOE430A:1424899_AT nicotinamide nucleotide adenylyltransferase 3 mm
MG-U74BV2:116274_AT nicotinamide nucleotide adenylyltransferase 3 mm
MOE430B:1432342_AT nicotinamide nucleotide adenylyltransferase 3 mm
MOUSE430_2:1432342_AT nicotinamide nucleotide adenylyltransferase 3 mm
MOE430B:1443149_AT Nicotinamide nucleotide adenylyltransferase 3 (Nmnat3), mRNA mm
MOUSE430_2:1443149_AT Nicotinamide nucleotide adenylyltransferase 3 (Nmnat3), mRNA mm
MOUSE430_2:1459128_AT Nicotinamide nucleotide adenylyltransferase 3 (Nmnat3), mRNA mm
MOE430B:1459128_AT Nicotinamide nucleotide adenylyltransferase 3 (Nmnat3), mRNA mm
MG-U74CV2:170840_AT Nicotinamide nucleotide adenylyltransferase 3 (Nmnat3), mRNA mm
MU19KSUBC:TC35511_AT Nicotinamide nucleotide adenylyltransferase 3 (Nmnat3), mRNA mm
RG-U34B:RC_AA963282_AT similar to Nicotinamide nucleotide adenylyltransferase 3 rn
RAE230A:1374025_AT similar to Nicotinamide nucleotide adenylyltransferase 3 rn
RAT230_2:1374025_AT similar to Nicotinamide nucleotide adenylyltransferase 3 rn
YEAST_2:1771172_AT Nicotinic acid mononucleotide adenylyltransferase, involved in NAD(+) salvage pathway Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA18360 Hypothetical protein W06B3.1 [Caenorhabditis elegans] ref|NP_510010.2| W06B3.1 [Caenorhabditis elegans] 1.0E-118
blast CAE69863 Hypothetical protein CBG16194 [Caenorhabditis briggsae] 9.0E-74
blast CAB04200 Hypothetical protein F26H9.4 [Caenorhabditis elegans] ref|NP_492480.1| F26H9.4 [Caenorhabditis elegans] sp|P91851|YUG4_CAEEL Hypothetical protein F26H9.4 in chromosome I 7.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 1.1E-42
Sequence
Target Sequence 
>C. ELEGANS:178653_AT
gagcccagtcagtgatggttatgcgaaaaagagtttgatcagcgctaaacatcgtcttgc
acaaaccgaagcagcaacttatgattctgactggattcatgcaagtggttgggaatgtgc
ccagtctgagtggactgcaactgttaatgttctgaaacatcatcagcaggataataaact
cggaagtgatgtgaatgtgctcttgttgtttggaggtgacgtcatcgaatcattcgacaa
gttttatgcagatggaacgccagtttgggatcgtgaagatgttgaggaaatcatctctgc
aggaatagtcgtccgatcgcgacctggttcagatcctgaacaaacccttaaaaaattgaa
cctcaatgaaaactctgacaaagtgcatttcatcaagaatgcaatctcgtcaaactcaat
aagttcaacaagtcttcgtgcagctctgaaagaacatcgctctatcaaatacaccacacc
agattccgtaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCCAGTCAGTGATGGTTATGCG 546 385 144 Antisense
TCAGCGCTAAACATCGTCTTGCACA 111 625 182 Antisense
GGGAATGTGCCCAGTCTGAGTGGAC 67 495 254 Antisense
GATGTGAATGTGCTCTTGTTGTTTG 361 409 331 Antisense
GATGGAACGCCAGTTTGGGATCGTG 296 405 394 Antisense
AGGAATAGTCGTCCGATCGCGACCT 28 55 444 Antisense
TCGCGACCTGGTTCAGATCCTGAAC 469 599 460 Antisense
GAATGCAATCTCGTCAAACTCAATA 646 329 540 Antisense
GTTCAACAAGTCTTCGTGCAGCTCT 310 445 566 Antisense
AACATCGCTCTATCAAATACACCAC 339 137 596 Antisense
ATACACCACACCAGATTCCGTAATC 251 23 612 Antisense
Sequence Source Affymetrix Proprietary Database