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[178652_at]

Description ZK84.1 /REP_DB=WormBase Gene ID /WP=CE02924 /TR=Q23635 /GB=AAC48204.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 55      6grp_total > 93      4grp_total > 50      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2406
1 2 3 4 range
A 620.1
(-1.7)
A 		2423.3
(3)
P 		1851.4
(1.5)
P 		127.9
(-3)
A 		2295
B 519
(-1.2)
A 		1708.1
(3)
P 		1536.5
(2.4)
P 		17.1
(-3)
A 		1691
C 447.7
(-1.6)
A 		1851.1
(3)
P 		1426.4
(1.6)
P 		17.9
(-3)
A 		1833
avr 528.9
(-1.5) 		1994.2
(3) 		1604.8
(1.8) 		54.3
(-3) 		1940

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3081
1 2 3 4 5 6 range
A 1624
(-1.4)
P 		1613.4
(-1.5)
P 		1083
(-3)
P 		2015.9
(-0.3)
P 		3176.6
(3)
P 		1344.2
(-2.3)
P 		2094
B 1520.5
(-1.4)
P 		1860.9
(0.2)
P 		1367.6
(-2.2)
P 		1851.3
(0.1)
P 		2461
(3)
P 		1187.3
(-3)
P 		1274
C 1429.4
(-2.1)
P 		1817.8
(-1.3)
P 		1339.2
(-2.3)
P 		1718.7
(-1.5)
P 		4045.7
(3)
P 		964.8
(-3)
P 		3081
avr 1524.6
(-2) 		1764
(-1.3) 		1263.3
(-2.7) 		1862
(-1) 		3227.8
(3) 		1165.4
(-3) 		2062
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 529
1 2 3 4 range
A 225.8
(-0.6)
A 		526
(3)
P 		484
(2.5)
P 		18.7
(-3)
A 		507
B 165.5
(-0.7)
A 		421.9
(3)
P 		356
(2.1)
P 		3.6
(-3)
A 		418
C 148.2
(-1.4)
A 		532.2
(3)
P 		497.1
(2.6)
P 		3
(-3)
A 		529
avr 179.8
(-0.9) 		493.4
(3) 		445.7
(2.4) 		8.4
(-3) 		485

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1073
1 2 3 4 5 6 range
A 299.4
(-2.5)
P 		573.8
(-0.2)
P 		235.9
(-3)
P 		511.3
(-0.7)
P 		958.6
(3)
P 		327.3
(-2.2)
P 		723
B 529.1
(-1.2)
P 		619.4
(-0.4)
P 		332.1
(-3)
P 		490.3
(-1.6)
P 		999.9
(3)
P 		442.8
(-2)
P 		668
C 529.8
(-1.7)
P 		554.7
(-1.6)
P 		340.9
(-2.9)
P 		345.6
(-2.9)
P 		1309.1
(3)
P 		323
(-3)
P 		986
avr 452.8
(-1.9) 		582.6
(-0.9) 		303
(-3) 		449.1
(-1.9) 		1089.2
(3) 		364.4
(-2.5) 		786
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4344
Sequence Type Exemplar sequence
Representative Public ID ZK84.1 NCBI
Target Description ZK84.1 /REP_DB=WormBase Gene ID /WP=CE02924 /TR=Q23635 /GB=AAC48204.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062801 NCBI Caenorhabditis elegans ZK84.1 (ZK84.1) mRNA, complete cds. 11/11 None
SNAP00000025491 ENSEMBL cdna:SNAP chromosome:CEL140:II:6021208:6023177:1 11/11 None
GENEFINDER00000025594 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6021700:6023177:1 11/11 None
ZK84.1 ENSEMBL cdna:known chromosome:CEL140:II:6020609:6023305:1 gene:ZK84.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6020606-6023174(+) 79.09 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK84.1
Entrez Gene 174008 Entrez gene
SwissProt Q23635 EMBL-EBI
WormBase CE02924 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627288_A_AT Calphotin dm
DROSGENOME1:152156_AT Calphotin dm
Protein Similarities
Method ID Description E-Value
blast AAC48204 Hypothetical protein ZK84.1 [Caenorhabditis elegans] ref|NP_495202.1| ZK84.1 [Caenorhabditis elegans] 1.0E-58
blast AAC48204 Hypothetical protein ZK84.1 [Caenorhabditis elegans] ref|NP_495202.1| ZK84.1 [Caenorhabditis elegans] 2.0E-26
blast CAE59237 Hypothetical protein CBG02561 [Caenorhabditis briggsae] 1.0E-23
blast AAC48204 Hypothetical protein ZK84.1 [Caenorhabditis elegans] ref|NP_495202.1| ZK84.1 [Caenorhabditis elegans] 5.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495202.1 1 5-22
ZK84.1 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:178652_AT
cagctgtcgaagagaccccagctccagctccagccgtcgaggagacaccagctccagctc
cagccgccgaagaaactcctgcccccgctccagccgctgcagaatatgcagctccagtcg
ccgaagagacaccagcaccagctccagccgccgaagagacaccagcaccagctcaagccg
ctgaagagacaccagcaccagctccagccgctgaagagacaccagcgtcagctccagccg
ctgaagagacaccagcaccagctccagccgccgaagaggccccagctccagctccggccg
ctccagaaactccagcaccagcagccgaaggtgctgctgctccagcgccaattgtttcga
gtggatatgatgccgcccaaagcaccgataccgttgtcgcctcatctgctccagccacat
cttctgatgcatcaggagctacgaactacgaagggcaacaatttgccattcaagccgctc
gaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTGTCGAAGAGACCCCAGCTCC 502 203 1892 Antisense
CTCCAGCCGTCGAGGAGACACCAGC 122 237 1919 Antisense
CCGCTCCAGCCGCTGCAGAATATGC 3 263 1976 Antisense
TGCAGAATATGCAGCTCCAGTCGCC 90 579 1989 Antisense
TCCAGTCGCCGAAGAGACACCAGCA 596 589 2004 Antisense
CGTCAGCTCCAGCCGCTGAAGAGAC 68 247 2117 Antisense
CTCCAGCGCCAATTGTTTCGAGTGG 40 237 2231 Antisense
GTGGATATGATGCCGCCCAAAGCAC 70 491 2252 Antisense
TCCAGCCACATCTTCTGATGCATCA 567 587 2301 Antisense
GATGCATCAGGAGCTACGAACTACG 333 413 2317 Antisense
ATTTGCCATTCAAGCCGCTCGAAAG 607 17 2352 Antisense
Sequence Source Affymetrix Proprietary Database