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[178651_at]

Description F08G2.5 /REP_DB=WormBase Gene ID /WP=CE19777 /TR=Q9XVA3 /GB=CAB04059.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 92.2
(0.8)
A 		56.7
(-0.9)
A 		13.9
(-3)
A 		137
(3)
A 		123
B 20.6
(-1.5)
A 		5.1
(-2.9)
A 		4.1
(-3)
A 		68.5
(3)
A 		64
C 32.6
(-1)
A 		6.3
(-3)
A 		22.4
(-1.8)
A 		85.9
(3)
A 		80
avr 48.5
(-0.5) 		22.7
(-2.3) 		13.5
(-3) 		97.1
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 138.7
(1.8)
A 		82.9
(-0.2)
A 		56.8
(-1.2)
A 		10.9
(-2.9)
A 		9.2
(-3)
A 		169.5
(3)
P 		160
B 133
(3)
P 		96.5
(1.3)
A 		22.5
(-2.3)
A 		9.7
(-2.9)
A 		7.7
(-3)
A 		76
(0.3)
P 		125
C 140.2
(3)
P 		97.7
(1.1)
A 		10
(-2.7)
A 		12.4
(-2.6)
A 		3.9
(-3)
A 		92
(0.9)
P 		136
avr 137.3
(3) 		92.4
(0.9) 		29.8
(-1.9) 		11
(-2.8) 		6.9
(-3) 		112.5
(1.9) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 33.6
(3)
A 		12.3
(-1.3)
A 		3.6
(-3)
A 		20.1
(0.3)
A 		30
B 6.6
(-0.5)
A 		1.3
(-2.9)
A 		1
(-3)
A 		14.6
(3)
A 		14
C 10.8
(1.3)
A 		1.8
(-3)
A 		7.8
(-0.2)
A 		14.5
(3)
A 		13
avr 17
(3) 		5.1
(-2.5) 		4.1
(-3) 		16.4
(2.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 25.6
(0.6)
A 		29.5
(1.2)
A 		12.4
(-1.5)
A 		2.8
(-3)
A 		2.8
(-3)
A 		41.3
(3)
P 		39
B 46.3
(3)
P 		32.1
(1.1)
A 		5.5
(-2.6)
A 		2.6
(-3)
A 		3.1
(-2.9)
A 		28.3
(0.5)
P 		44
C 52
(3)
P 		29.8
(0.4)
A 		2.6
(-2.8)
A 		2.5
(-2.9)
A 		1.3
(-3)
A 		30.8
(0.5)
P 		51
avr 41.3
(3) 		30.5
(1.3) 		6.8
(-2.3) 		2.6
(-3) 		2.4
(-3) 		33.5
(1.8) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3722
Sequence Type Exemplar sequence
Representative Public ID F08G2.5 NCBI
Target Description F08G2.5 /REP_DB=WormBase Gene ID /WP=CE19777 /TR=Q9XVA3 /GB=CAB04059.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064500(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064500 NCBI Caenorhabditis elegans F08G2.5 (F08G2.5) mRNA, complete cds. 11/11 None
SNAP00000034716 ENSEMBL cdna:SNAP chromosome:CEL140:II:13831274:13835555:-1 9/11 None
GENEFINDER00000034723 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13832992:13833528:-1 11/11 None
F08G2.5 ENSEMBL cdna:known chromosome:CEL140:II:13832992:13833528:-1 gene:F08G2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13832988-13833525(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08G2.5
Entrez Gene 184201 Entrez gene
SwissProt Q9XVA3 EMBL-EBI
WormBase CE19777 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04062 Hypothetical protein F08G2.6 [Caenorhabditis elegans] ref|NP_496902.1| INSulin related family member (ins-37) [Caenorhabditis elegans] 2.0E-82
blast CAB04059 Hypothetical protein F08G2.5 [Caenorhabditis elegans] ref|NP_496901.1| F08G2.5 [Caenorhabditis elegans] 5.0E-49
blast CAB04059 Hypothetical protein F08G2.5 [Caenorhabditis elegans] ref|NP_496901.1| F08G2.5 [Caenorhabditis elegans] 2.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR003235 EMBL-EBI Nematode insulin-related peptide, beta type 1.5E-32
Sequence
Target Sequence 
>C. ELEGANS:178651_AT
atgagaaagctcagcactcgtccacttcctcttggagacggattcttcgactcgtcatct
gatagttcagaatctgaactttcagataaggacgatgaagatagatattccgactccacg
gtttccacgttaacttctcaagatcgtagagacacccaagggtgtcaatatccacgttct
tcggaacttccgatctctgaatctccagctccacgagctcgacgagctcgtaaacagaga
tcgaagagaaagtcggtgaaacctccgaacacttcgtctgacgactcttctgatgactct
gatgattcttcctcgtcctcttcttccgatgactcggtgagttctaaatcatcaaccaat
tccagtgactcctcgccatgccgttgtcgagatgggcttgccgagtgggagcagcgtcat
gggagacgatggcatccgtatggaagaaatggaacgtgggaaccataccgcaatcgtcgt
cgcgggatctatgattgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGAAAGCTCAGCACTCGTCCAC 602 45 13 Antisense
GAGACGGATTCTTCGACTCGTCATC 559 393 47 Antisense
GGTTTCCACGTTAACTTCTCAAGAT 441 505 132 Antisense
AGGGTGTCAATATCCACGTTCTTCG 158 57 171 Antisense
TCGGAACTTCCGATCTCTGAATCTC 683 601 193 Antisense
CTTCGTCTGACGACTCTTCTGATGA 45 221 284 Antisense
ATGACTCTGATGATTCTTCCTCGTC 507 45 305 Antisense
TCCTCTTCTTCCGATGACTCGGTGA 320 593 328 Antisense
GCCGAGTGGGAGCAGCGTCATGGGA 352 283 412 Antisense
ACGTGGGAACCATACCGCAATCGTC 188 93 466 Antisense
TCGTCGTCGCGGGATCTATGATTGT 209 605 486 Antisense
Sequence Source Affymetrix Proprietary Database