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[178650_at]

Description C44H9.8 /REP_DB=WormBase Gene ID /WP=CE05424 /TR=Q18635 /GB=CAA99788.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 05      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 70.2
(-0.7)
P 		42.1
(-2.5)
A 		34.5
(-3)
A 		127.1
(3)
P 		93
B 96.6
(3)
P 		38.5
(-3)
A 		67.6
(0)
A 		67.1
(-0)
P 		58
C 56.4
(-0.9)
P 		49
(-1.3)
A 		18.2
(-3)
A 		126.5
(3)
P 		108
avr 74.4
(0.1) 		43.2
(-2.7) 		40.1
(-3) 		106.9
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 51.5
(-0.3)
A 		34.3
(-3)
A 		72.4
(3)
P 		49.4
(-0.6)
P 		50.4
(-0.5)
A 		48.6
(-0.7)
A 		38
B 63.7
(3)
P 		44.3
(0.3)
P 		22.9
(-2.7)
A 		23.7
(-2.6)
A 		20.9
(-3)
A 		41.5
(-0.1)
A 		43
C 54.4
(2.7)
P 		56.8
(3)
P 		22.1
(-1.1)
A 		44.2
(1.5)
A 		6.1
(-3)
A 		34.8
(0.4)
A 		51
avr 56.5
(3) 		45.1
(0.8) 		39.1
(-0.4) 		39.1
(-0.4) 		25.8
(-3) 		41.6
(0.1) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 25.5
(3)
P 		9.1
(-3)
A 		9
(-3)
A 		18.6
(0.5)
P 		17
B 30.8
(3)
P 		9.5
(-3)
A 		15.7
(-1.3)
A 		14.3
(-1.6)
P 		21
C 18.7
(2)
P 		14.1
(0.1)
A 		6.3
(-3)
A 		21.3
(3)
P 		15
avr 25
(3) 		10.9
(-2.8) 		10.3
(-3) 		18.1
(0.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.5
(-3)
A 		12.2
(-0.4)
A 		15.8
(3)
P 		12.5
(-0.1)
P 		15.2
(2.4)
A 		11.8
(-0.8)
A 		6
B 22.2
(3)
P 		14.7
(0.3)
P 		5.6
(-3)
A 		6.3
(-2.7)
A 		8.5
(-2)
A 		15.5
(0.6)
A 		17
C 20.2
(3)
P 		17.3
(2)
P 		5.6
(-1.8)
A 		8.9
(-0.7)
A 		2
(-3)
A 		11.7
(0.2)
A 		18
avr 17.3
(3) 		14.7
(1.2) 		9
(-2.7) 		9.2
(-2.6) 		8.6
(-3) 		13
(0) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13707
Sequence Type Exemplar sequence
Representative Public ID C44H9.8 NCBI
Target Description C44H9.8 /REP_DB=WormBase Gene ID /WP=CE05424 /TR=Q18635 /GB=CAA99788.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073814(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073814 NCBI Caenorhabditis elegans C44H9.8 (C44H9.8) mRNA, complete cds. 10/11 None
SNAP00000031462 ENSEMBL cdna:SNAP chromosome:CEL140:V:12849508:12852387:-1 10/11 None
GENEFINDER00000031468 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12849508:12852387:-1 10/11 None
C44H9.8 ENSEMBL cdna:known chromosome:CEL140:V:12849508:12851129:-1 gene:C44H9.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12849507-12851129(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44H9.8
Entrez Gene 183466 Entrez gene
SwissProt Q18635 EMBL-EBI
WormBase CE30630 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99788 Hypothetical protein C44H9.8 [Caenorhabditis elegans] ref|NP_506215.2| C44H9.8 [Caenorhabditis elegans] 0.0
blast CAA99787 Hypothetical protein C44H9.5 [Caenorhabditis elegans] ref|NP_506216.1| C44H9.5 [Caenorhabditis elegans] 3.0E-98
blast CAE64730 Hypothetical protein CBG09517 [Caenorhabditis briggsae] 1.0E-79
blast CAE64730 Hypothetical protein CBG09517 [Caenorhabditis briggsae] 2.0E-77
blast CAE64730 Hypothetical protein CBG09517 [Caenorhabditis briggsae] 2.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506215.2 1 252-274
C44H9.8 1 252-274
SNAP00000031462 1 454-476
GENEFINDER00000031468 1 451-473
Sequence
Target Sequence 
>C. ELEGANS:178650_AT
aaggaagctgcagaacatcgtgttgttgcttcatgtgggttcatgttcgaatattgcatt
caattttttggaagagactgtcaaactcgtttgtcaacttgtctgaatgatattaacgag
atggattatacttgtgaagatgcaatcagaaatattgtcaaagttctgtatccggataca
aatgcaacatcaaagttggaaaaatattcttcaactgttgaagttgccgagactgggttc
attcaaacaattggtgcaattggtgcaattgtcattggaattattttttttgttttgatt
acagctgttttcctgatgaaatttgagaaacgttcttgcaaacgtaattccggacccagt
gagccaccacatcaaggtgatggaaatagacttcttcctgctgataactctcctcttcat
cagcaattggttgtcatcaactcaataagttctagctacacggatctcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAAGCTGCAGAACATCGTGTTG 331 161 322 Antisense
GTGTTGTTGCTTCATGTGGGTTCAT 394 485 341 Antisense
GTGGGTTCATGTTCGAATATTGCAT 287 489 356 Antisense
CAAACTCGTTTGTCAACTTGTCTGA 38 193 403 Antisense
GAAGTTGCCGAGACTGGGTTCATTC 368 335 541 Antisense
TTGCAAACGTAATTCCGGACCCAGT 339 683 657 Antisense
CCCAGTGAGCCACCACATCAAGGTG 169 257 676 Antisense
AATAGACTTCTTCCTGCTGATAACT 654 171 706 Antisense
GCTGATAACTCTCCTCTTCATCAGC 14 297 721 Antisense
TCCTCTTCATCAGCAATTGGTTGTC 134 593 732 Antisense
AAGTTCTAGCTACACGGATCTCAAT 321 157 768 Antisense
Sequence Source Affymetrix Proprietary Database