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[178649_s_at]

Description F41D3.7 /REP_DB=WormBase Gene ID /WP=CE16026 /TR=O45511 /GB=CAB04378.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 36.4
(-3)
A 		55.7
(3)
A 		42.2
(-1.2)
A 		42.9
(-1)
A 		19
B 37.2
(2.5)
A 		30.2
(0.4)
A 		19.2
(-3)
A 		38.8
(3)
A 		20
C 24.6
(-1.1)
A 		5.8
(-3)
A 		9.7
(-2.6)
A 		66.6
(3)
A 		61
avr 32.7
(-0.9) 		30.6
(-1.4) 		23.7
(-3) 		49.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 68.6
(3)
A 		37.8
(-0.1)
A 		61.7
(2.3)
A 		47.8
(0.9)
A 		47.8
(0.9)
A 		8.4
(-3)
A 		60
B 14.4
(-3)
A 		14.2
(-3)
A 		67
(3)
A 		33.6
(-0.8)
A 		37.3
(-0.4)
A 		25
(-1.8)
A 		53
C 26.9
(-2.1)
A 		37.8
(-0.3)
A 		21.8
(-3)
A 		56.9
(3)
A 		39.9
(0.1)
A 		34.4
(-0.8)
A 		35
avr 36.6
(0) 		29.9
(-1.4) 		50.2
(3) 		46.1
(2.1) 		41.7
(1.2) 		22.6
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.2
(3)
A 		12.1
(2)
A 		11
(1.1)
A 		6.3
(-3)
A 		7
B 11.9
(3)
A 		7.5
(-0.5)
A 		4.4
(-3)
A 		8.3
(0.1)
A 		8
C 8.2
(1.1)
A 		1.7
(-3)
A 		3.4
(-1.9)
A 		11.2
(3)
A 		10
avr 11.1
(3) 		7.1
(-2) 		6.3
(-3) 		8.6
(-0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 12.7
(2.2)
A 		13.4
(2.5)
A 		13.4
(2.5)
A 		12.1
(1.9)
A 		14.4
(3)
A 		2
(-3)
A 		12
B 5
(-2.8)
A 		4.7
(-3)
A 		16.3
(3)
A 		8.9
(-0.8)
A 		15.1
(2.4)
A 		9.3
(-0.6)
A 		12
C 10
(0.6)
A 		11.5
(1.8)
A 		5.6
(-3)
A 		11.4
(1.8)
A 		12.9
(3)
A 		11.5
(1.8)
A 		7
avr 9.2
(-1.5) 		9.9
(-0.9) 		11.8
(0.9) 		10.8
(-0) 		14.1
(3) 		7.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178649_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.401
Sequence Type Exemplar sequence
Representative Public ID F41D3.7 NCBI
Target Description F41D3.7 /REP_DB=WormBase Gene ID /WP=CE16026 /TR=O45511 /GB=CAB04378.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060695(11), NM_060699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060695 NCBI Caenorhabditis elegans F41D3.7 (F41D3.7) mRNA, complete cds. 11/11 None
NM_060699 NCBI Caenorhabditis elegans F41D3.11 (F41D3.11) mRNA, complete cds. 11/11 A 
SNAP00000037773 ENSEMBL cdna:SNAP chromosome:CEL140:I:12275136:12280299:1 11/11 None
GENEFINDER00000037792 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12275136:12275520:1 11/11 None
GENEFINDER00000037786 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12284140:12286897:-1 11/11 None
F41D3.7 ENSEMBL cdna:known chromosome:CEL140:I:12275196:12275613:1 gene:F41D3.7 11/11 None
F41D3.11 ENSEMBL cdna:known chromosome:CEL140:I:12285015:12286837:-1 gene:F41D3.11 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037777 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12275126-12275544(+) 100.0 100.0
chrI:12283897-12286768(-) 96.57 96.57
Public Domain and Genome References
Gene Title

Ensembl F41D3.7
F41D3.11
Entrez Gene 185607 Entrez gene
185611 Entrez gene
WormBase CE16030 Wormbase
CE16026 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04382 Hypothetical protein F41D3.11 [Caenorhabditis elegans] ref|NP_493100.1| F41D3.11 [Caenorhabditis elegans] 0.0
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-114
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-113
blast AAC19260 Hypothetical protein ZK1055.2 [Caenorhabditis elegans] ref|NP_504676.1| ZK1055.2 [Caenorhabditis elegans] 1.0E-112
blast AAC19260 Hypothetical protein ZK1055.2 [Caenorhabditis elegans] ref|NP_504676.1| ZK1055.2 [Caenorhabditis elegans] 1.0E-111
blast CAB04378 Hypothetical protein F41D3.7 [Caenorhabditis elegans] ref|NP_493096.1| F41D3.7 [Caenorhabditis elegans] 1.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493096.1 1 13-32
NP_493100.1 1 13-32
F41D3.7 1 13-32
F41D3.11 1 13-32
SNAP00000037773 1 35-52
GENEFINDER00000037792 1 35-52
GENEFINDER00000037786 1 35-52
Sequence
Target Sequence 
>C. ELEGANS:178649_S_AT
atgatgtggccgagaagaccaaaatgctccaacgactctaccgccgtacttgtatttgtt
ttagtcatattttttgtgtacaccctgatgacttacaatgaggctcagaaagaaaacttc
aaggacttggaaggtattgaaatgtctgagggaagaatgaacaatgccacgttgaaactg
cttgaggggatcgatgttacagaagctgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATGTGGCCGAGAAGACCAAAAT 699 41 13 Antisense
CTCTACCGCCGTACTTGTATTTGTT 123 231 48 Antisense
GCCGTACTTGTATTTGTTTTAGTCA 85 285 55 Antisense
TTAGTCATATTTTTTGTGTACACCC 334 681 73 Antisense
TTTTGTGTACACCCTGATGACTTAC 281 679 84 Antisense
GATGACTTACAATGAGGCTCAGAAA 557 411 99 Antisense
GGAAGGTATTGAAATGTCTGAGGGA 336 531 141 Antisense
GAACAATGCCACGTTGAAACTGCTT 655 351 171 Antisense
GCCACGTTGAAACTGCTTGAGGGGA 655 279 178 Antisense
ACTGCTTGAGGGGATCGATGTTACA 331 97 189 Antisense
GGGGATCGATGTTACAGAAGCTGTA 65 499 198 Antisense
Sequence Source Affymetrix Proprietary Database