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[178648_s_at]

Description F30F8.1 /REP_DB=WormBase Gene ID /WP=CE09813 /TR=Q93649 /GB=CAB03029.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 06      6grp_total > 97      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 72.3
(-1.9)
A 		59.2
(-2.8)
P 		55.8
(-3)
P 		143.3
(3)
P 		88
B 69.1
(-3)
P 		73.1
(-1.3)
P 		83.3
(3)
A 		81.7
(2.3)
P 		14
C 42.3
(-3)
A 		66
(-0.3)
A 		78.2
(1.2)
P 		94.1
(3)
P 		52
avr 61.2
(-3) 		66.1
(-2.3) 		72.4
(-1.5) 		106.4
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 556
1 2 3 4 5 6 range
A 46.6
(-2.9)
A 		38.1
(-3)
A 		78.9
(-2.6)
P 		196.3
(-1.3)
P 		328.5
(0.1)
P 		591.9
(3)
P 		554
B 37
(-3)
A 		35.6
(-3)
A 		70.1
(-2.6)
P 		119.5
(-2)
P 		421.8
(1.5)
P 		555.8
(3)
P 		520
C 46.2
(-2.9)
A 		42.1
(-3)
A 		131
(-1.9)
P 		167.3
(-1.4)
P 		450.4
(2.1)
P 		518.5
(3)
P 		476
avr 43.3
(-2.9) 		38.6
(-3) 		93.3
(-2.4) 		161
(-1.6) 		400.2
(1.2) 		555.4
(3) 		517
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 26.3
(3)
A 		12.9
(-3)
P 		14.6
(-2.2)
P 		21
(0.6)
P 		13
B 22
(3)
P 		18
(-2.2)
P 		19.3
(-0.5)
A 		17.4
(-3)
P 		5
C 14
(-3)
A 		19
(-0.7)
A 		27.2
(3)
P 		15.9
(-2.1)
P 		13
avr 20.8
(3) 		16.6
(-3) 		20.4
(2.4) 		18.1
(-0.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 8.6
(-3)
A 		13.5
(-2.8)
A 		17.2
(-2.6)
P 		49.8
(-1.2)
P 		99.1
(1)
P 		144.1
(3)
P 		136
B 12.9
(-3)
A 		11.9
(-3)
A 		17
(-2.8)
P 		31.7
(-2.4)
P 		171.4
(1.9)
P 		207.3
(3)
P 		195
C 17.1
(-2.8)
A 		12.8
(-3)
A 		33.3
(-2.2)
P 		33.6
(-2.2)
P 		145.7
(2)
P 		173.6
(3)
P 		161
avr 12.9
(-3) 		12.7
(-3) 		22.5
(-2.6) 		38.4
(-2) 		138.7
(1.7) 		175
(3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178648_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1127
Sequence Type Exemplar sequence
Representative Public ID F30F8.1 NCBI
Target Description F30F8.1 /REP_DB=WormBase Gene ID /WP=CE09813 /TR=Q93649 /GB=CAB03029.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059762 NCBI Caenorhabditis elegans F30F8.1 (F30F8.1) mRNA, complete cds. 11/11 None
SNAP00000014202 ENSEMBL cdna:SNAP chromosome:CEL140:I:7841076:7843467:-1 11/11 None
GENEFINDER00000014212 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7841076:7843467:-1 11/11 None
F30F8.1 ENSEMBL cdna:known chromosome:CEL140:I:7840884:7843530:-1 gene:F30F8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7841006-7843398(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F30F8.1
Entrez Gene 172548 Entrez gene
SwissProt Q93649 EMBL-EBI
WormBase CE09813 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03029 Hypothetical protein F30F8.1 [Caenorhabditis elegans] ref|NP_492163.1| F30F8.1 [Caenorhabditis elegans] 0.0
blast CAE56119 Hypothetical protein CBG23727 [Caenorhabditis briggsae] 1.0E-67
blast CAE56118 Hypothetical protein CBG23726 [Caenorhabditis briggsae] 1.0E-62
Sequence
Target Sequence 
>C. ELEGANS:178648_S_AT
tgtatcatttctgcaaagcttcctgctccaaacaaaatcagtattaaaggacgtggaatg
cttgttcatccaattgggcgcgaagatcagacaagcgagagaagttggttcatttggaat
gattcacttggattgatggacgttatcagtggatcggctcgaattgctttgaagaagtac
acttgctgggataagcaacttgatattgtgattttccaagcatcgttcgaagaccgcaag
ttccgtgttgatcaaatcacggtgataacggaaatgaacaccaagaggagcacattccca
gaggatgccttcttggtggatgatgccgttttcaagcaaactggaactgctgatgtgaca
ttccactcgcagagcatcaaagcggacattgtcatcaagaaagcattgttggggtctttc
gaagtgtccaaagcaagcaactttgagatggtggttgcaccaacctttccgcattccacc
caactcgaatttcgaggaatgttgctgattgatgtgccatctaggttctggagcagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTATCATTTCTGCAAAGCTTCCTG 233 561 1360 Antisense
AAGCTTCCTGCTCCAAACAAAATCA 248 151 1375 Antisense
AATGCTTGTTCATCCAATTGGGCGC 491 163 1416 Antisense
GGACGTTATCAGTGGATCGGCTCGA 507 523 1497 Antisense
GGATCGGCTCGAATTGCTTTGAAGA 24 513 1510 Antisense
GAAGACCGCAAGTTCCGTGTTGATC 320 339 1588 Antisense
GAGCACATTCCCAGAGGATGCCTTC 493 389 1647 Antisense
GGATGCCTTCTTGGTGGATGATGCC 77 513 1662 Antisense
ATGTGACATTCCACTCGCAGAGCAT 11 51 1712 Antisense
GCATTGTTGGGGTCTTTCGAAGTGT 392 305 1762 Antisense
GTGCCATCTAGGTTCTGGAGCAGAG 457 477 1873 Antisense
Sequence Source Affymetrix Proprietary Database