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[178646_at]

Description F33E2.4 /REP_DB=WormBase Gene ID /WP=CE09905 /TR=O01698 /GB=CAB06540.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 40      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 5.8
(-3)
A 		11.1
(-2.5)
A 		76.4
(3)
A 		69.6
(2.4)
A 		71
B 4.5
(-3)
A 		53.1
(0.1)
A 		98.9
(3)
A 		4.2
(-3)
A 		95
C 10.2
(-3)
A 		11
(-2.9)
A 		101.1
(3)
A 		29.9
(-1.7)
A 		91
avr 6.8
(-3) 		25.1
(-1.7) 		92.1
(3) 		34.6
(-1) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 4.5
(-3)
A 		9.7
(-2.4)
A 		13.2
(-2.1)
A 		8.5
(-2.6)
A 		8.5
(-2.6)
A 		60.1
(3)
A 		56
B 18.5
(-0.7)
A 		8
(-2.2)
A 		29
(0.7)
A 		46
(3)
A 		20.4
(-0.5)
A 		1.8
(-3)
A 		44
C 37.1
(3)
A 		9.6
(-2.5)
A 		28.9
(1.4)
A 		9.6
(-2.5)
A 		7
(-3)
A 		30.1
(1.6)
A 		30
avr 20
(0) 		9.1
(-3) 		23.7
(1.1) 		21.4
(0.4) 		12
(-2.2) 		30.7
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 2.1
(-3)
A 		2.4
(-2.9)
A 		20
(3)
A 		10.2
(-0.3)
A 		18
B 1.4
(-2.9)
A 		13.1
(0.3)
A 		22.9
(3)
A 		0.9
(-3)
A 		22
C 3.4
(-3)
A 		3.2
(-3)
A 		35.2
(3)
A 		5
(-2.7)
A 		32
avr 2.3
(-3) 		6.2
(-2) 		26
(3) 		5.4
(-2.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.8
(-3)
A 		3.5
(-1.8)
A 		2.9
(-2.1)
A 		2.2
(-2.4)
A 		2.6
(-2.2)
A 		14.6
(3)
A 		14
B 6.4
(-0)
A 		2.7
(-2)
A 		7.1
(0.3)
A 		12.2
(3)
A 		8.3
(1)
A 		0.7
(-3)
A 		12
C 13.8
(3)
A 		2.9
(-2.5)
A 		7.4
(-0.2)
A 		1.9
(-3)
A 		2.3
(-2.8)
A 		10.1
(1.1)
A 		12
avr 7
(1.4) 		3
(-3) 		5.8
(0.1) 		5.4
(-0.4) 		4.4
(-1.5) 		8.5
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178646_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1903
Sequence Type Exemplar sequence
Representative Public ID F33E2.4 NCBI
Target Description F33E2.4 /REP_DB=WormBase Gene ID /WP=CE09905 /TR=O01698 /GB=CAB06540.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060788(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060788 NCBI Caenorhabditis elegans F33E2.4 (F33E2.4) mRNA, complete cds. 11/11 None
SNAP00000035921 ENSEMBL cdna:SNAP chromosome:CEL140:I:12590362:12591351:1 11/11 None
GENEFINDER00000035928 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12590425:12594092:1 10/11 None
F33E2.4 ENSEMBL cdna:known chromosome:CEL140:I:12590407:12591420:1 gene:F33E2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12590337-12591365(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33E2.4
Entrez Gene 185234 Entrez gene
SwissProt O01698 EMBL-EBI
WormBase CE34180 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB06540 Hypothetical protein F33E2.4 [Caenorhabditis elegans] ref|NP_493189.2| F33E2.4 [Caenorhabditis elegans] 2.0E-67
blast CAB06540 Hypothetical protein F33E2.4 [Caenorhabditis elegans] ref|NP_493189.2| F33E2.4 [Caenorhabditis elegans] 4.0E-56
blast CAB06540 Hypothetical protein F33E2.4 [Caenorhabditis elegans] ref|NP_493189.2| F33E2.4 [Caenorhabditis elegans] 1.0E-48
blast CAE17784 Hypothetical protein F33E2.7 [Caenorhabditis elegans] ref|NP_001021446.1| F33E2.7 [Caenorhabditis elegans] 2.0E-31
blast AAY86281 Hypothetical protein T09D3.8 [Caenorhabditis elegans] 1.0E-27
blast AAY86281 Hypothetical protein T09D3.8 [Caenorhabditis elegans] 3.0E-27
blast AAY86281 Hypothetical protein T09D3.8 [Caenorhabditis elegans] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:178646_AT
gaaaatgatgccgccagaggatgttggctatactactgaagaaccaatgggtttgactac
tttaacaagttttaccgaagcaacgacggagcctttgactacagtaacaatgagagagaa
accaactaccccggtggaagaggaaccaactaccccggtggacgaggaaccaaccaccac
aatggtagaggatgactgtactgtatgtaatattgatgatgttttgctgccagaggatat
gggcatgaaaaaagttccaactttagttatgtatgtttggaactatgaaaatactgagac
aatatatgactataggaaaactaatgacactgctgatggatgcattcaacaaatagttgg
ttgcatgtctcccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATGATGCCGCCAGAGGATGTT 624 353 27 Antisense
GAGGATGTTGGCTATACTACTGAAG 506 403 43 Antisense
CAATGGGTTTGACTACTTTAACAAG 236 181 71 Antisense
TTACCGAAGCAACGACGGAGCCTTT 143 681 98 Antisense
GACGGAGCCTTTGACTACAGTAACA 166 377 111 Antisense
ATGAGAGAGAAACCAACTACCCCGG 375 43 136 Antisense
GTGGACGAGGAACCAACCACCACAA 97 489 184 Antisense
TAGAGGATGACTGTACTGTATGTAA 292 651 212 Antisense
ATTGATGATGTTTTGCTGCCAGAGG 706 3 238 Antisense
GACACTGCTGATGGATGCATTCAAC 453 367 352 Antisense
AAATAGTTGGTTGCATGTCTCCCGC 234 115 377 Antisense
Sequence Source Affymetrix Proprietary Database