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[178644_at]

Description F14D7.4 /REP_DB=WormBase Gene ID /WP=CE09382 /TR=Q19456 /GB=CAB01160.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      6grp_total > 94      4grp_total > 03      6grp_high1_sub > In      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 41.2
(-2)
P 		13.4
(-3)
A 		18
(-2.8)
A 		185.1
(3)
P 		172
B 40
(-2.1)
A 		14.5
(-3)
A 		23.1
(-2.7)
A 		183.2
(3)
P 		169
C 46.1
(-1.9)
P 		27.4
(-2.5)
A 		11.1
(-3)
A 		194.5
(3)
P 		183
avr 42.4
(-2.1) 		18.4
(-3) 		17.4
(-3) 		187.6
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 1.7
(-3)
A 		57
(1.2)
P 		58.2
(1.3)
P 		54.6
(1.1)
P 		79.9
(3)
P 		67.2
(2)
P 		78
B 16.8
(-3)
P 		53.7
(1.2)
P 		17.2
(-3)
A 		43.7
(0.1)
M 		69.6
(3)
P 		64.8
(2.5)
P 		53
C 34.5
(-0.9)
P 		50.3
(1.1)
P 		18.1
(-3)
A 		65.4
(3)
P 		55.5
(1.7)
P 		62.1
(2.6)
P 		47
avr 17.7
(-3) 		53.7
(1.3) 		31.2
(-1.4) 		54.6
(1.4) 		68.3
(3) 		64.7
(2.6) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 15
(-0)
P 		2.9
(-3)
A 		4.7
(-2.6)
A 		27.1
(3)
P 		24
B 12.8
(-1.4)
A 		3.6
(-3)
A 		5.4
(-2.7)
A 		39
(3)
P 		35
C 15.3
(-0.6)
P 		7.9
(-2.2)
A 		3.9
(-3)
A 		32.8
(3)
P 		29
avr 14.4
(-0.9) 		4.8
(-3) 		4.7
(-3) 		33
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.3
(-3)
A 		20.3
(2)
P 		12.7
(0.1)
P 		13.8
(0.4)
P 		24.1
(3)
P 		16.3
(1)
P 		24
B 5.9
(-2.6)
P 		17.9
(0.4)
P 		4.2
(-3)
A 		11.6
(-1.2)
M 		28.3
(3)
P 		24.2
(2)
P 		24
C 12.8
(0)
P 		15.3
(1)
P 		4.6
(-3)
A 		13.1
(0.1)
P 		18
(2)
P 		20.8
(3)
P 		16
avr 6.3
(-3) 		17.8
(1) 		7.2
(-2.7) 		12.8
(-0.7) 		23.5
(3) 		20.4
(1.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178644_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14677
Sequence Type Exemplar sequence
Representative Public ID F14D7.4 NCBI
Target Description F14D7.4 /REP_DB=WormBase Gene ID /WP=CE09382 /TR=Q19456 /GB=CAB01160.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F14D7.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:14300073:14300694:-1 gene:F14D7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017367 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14300072-14300694(-) 100.0 100.0
Public Domain and Genome References
Ensembl F14D7.4
Sequence
Target Sequence 
>C. ELEGANS:178644_AT
gaaaacttgtccagaattcacgccaaatcaatgggacatcgttttagctctaattgcgtt
tgtcggtgttgtgttaaaatcaaattgaaaaaagaaacgaaaggatccttatttttgtca
catctagcggaagtggactgtggattctgtcttctttatctctggatgtactcgtttaca
agtgcagcaatatatttaaaaaattacacttattgtaaaattgctgtcgttcttctcatg
ttctgtatcatcttcgaaaagttcctttggacttgttcttcgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACTTGTCCAGAATTCACGCCA 634 353 28 Antisense
ATTCACGCCAAATCAATGGGACATC 359 11 43 Antisense
ATGGGACATCGTTTTAGCTCTAATT 423 49 58 Antisense
ATTGCGTTTGTCGGTGTTGTGTTAA 131 7 80 Antisense
AGGATCCTTATTTTTGTCACATCTA 365 57 129 Antisense
GTCACATCTAGCGGAAGTGGACTGT 695 463 144 Antisense
TGTGGATTCTGTCTTCTTTATCTCT 499 555 166 Antisense
GGATGTACTCGTTTACAAGTGCAGC 58 513 191 Antisense
ATTGTAAAATTGCTGTCGTTCTTCT 616 3 239 Antisense
TTCTCATGTTCTGTATCATCTTCGA 141 693 260 Antisense
TTCCTTTGGACTTGTTCTTCGAGAA 467 697 289 Antisense
Sequence Source Affymetrix Proprietary Database