[Home] | [Total List]

[178642_at]

Description T03F6.4 /REP_DB=WormBase Gene ID /WP=CE16338 /TR=O45741 /GB=CAB03281.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 95      6grp_total > 78      4grp_total > 13      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 546
1 2 3 4 range
A 441.8
(-0.8)
P 		366
(-1.7)
P 		266
(-3)
P 		737.8
(3)
P 		472
B 529.8
(-0.2)
P 		291.1
(-2.9)
P 		286.1
(-3)
P 		812
(3)
P 		526
C 544.3
(0.2)
P 		381.6
(-1.8)
P 		284
(-3)
P 		777.1
(3)
P 		493
avr 505.3
(-0.3) 		346.2
(-2.2) 		278.7
(-3) 		775.6
(3) 		497

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1385
1 2 3 4 5 6 range
A 316.3
(-3)
P 		615.8
(-1.4)
P 		365.2
(-2.7)
P 		451.3
(-2.3)
P 		847.7
(-0.1)
P 		1415.2
(3)
P 		1099
B 295.5
(-3)
P 		622
(-1.2)
P 		351.3
(-2.7)
P 		460.7
(-2.1)
P 		783.8
(-0.3)
P 		1385.1
(3)
P 		1090
C 255.3
(-3)
P 		629.8
(-1.4)
P 		459.3
(-2.1)
P 		435.4
(-2.2)
P 		704.3
(-1.1)
P 		1640
(3)
P 		1385
avr 289
(-3) 		622.5
(-1.3) 		391.9
(-2.5) 		449.1
(-2.2) 		778.6
(-0.5) 		1480.1
(3) 		1191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 160.9
(3)
P 		79.4
(-2.4)
P 		69.5
(-3)
P 		108
(-0.5)
P 		91
B 168.9
(2.8)
P 		71.9
(-2.7)
P 		66.3
(-3)
P 		173
(3)
P 		107
C 180.2
(3)
P 		109.7
(-2.2)
P 		99
(-3)
P 		131
(-0.6)
P 		81
avr 170
(3) 		87
(-2.4) 		78.3
(-3) 		137.3
(0.9) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 58.3
(-3)
P 		219
(0.4)
P 		79.5
(-2.6)
P 		114.5
(-1.8)
P 		255.8
(1.1)
P 		344.6
(3)
P 		286
B 102.8
(-2.8)
P 		207.1
(-1.3)
P 		85.3
(-3)
P 		122
(-2.5)
P 		318.4
(0.2)
P 		516.5
(3)
P 		431
C 94.6
(-2.9)
P 		192.2
(-1.6)
P 		116.9
(-2.6)
P 		87.6
(-3)
P 		227.9
(-1.2)
P 		549
(3)
P 		461
avr 85.2
(-3) 		206.1
(-1.1) 		93.9
(-2.9) 		108
(-2.6) 		267.4
(-0.2) 		470
(3) 		385
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178642_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8010
Sequence Type Exemplar sequence
Representative Public ID T03F6.4 NCBI
Target Description T03F6.4 /REP_DB=WormBase Gene ID /WP=CE16338 /TR=O45741 /GB=CAB03281.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067356 NCBI Caenorhabditis elegans T03F6.4 (T03F6.4) mRNA, complete cds. 11/11 None
SNAP00000014316 ENSEMBL cdna:SNAP chromosome:CEL140:III:13385715:13390229:1 11/11 None
GENEFINDER00000014322 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13385715:13387814:1 10/11 None
T03F6.4 ENSEMBL cdna:known chromosome:CEL140:III:13385666:13387869:1 gene:T03F6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13384267-13387337(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03F6.4
Entrez Gene 188023 Entrez gene
SwissProt O45741 EMBL-EBI
WormBase CE32483 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03281 Hypothetical protein T03F6.4 [Caenorhabditis elegans] ref|NP_499757.2| T03F6.4 [Caenorhabditis elegans] 0.0
blast CAE73713 Hypothetical protein CBG21226 [Caenorhabditis briggsae] 1.0E-176
blast CAB03281 Hypothetical protein T03F6.4 [Caenorhabditis elegans] ref|NP_499757.2| T03F6.4 [Caenorhabditis elegans] 1.0E-175
blast CAE73713 Hypothetical protein CBG21226 [Caenorhabditis briggsae] 1.0E-167
blast CAB03280 Hypothetical protein T03F6.3 [Caenorhabditis elegans] ref|NP_499758.1| T03F6.3 [Caenorhabditis elegans] sp|Q9XVJ2|GNPI_CAEEL Probable glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P deaminase) 1.0E-151
blast CAE73713 Hypothetical protein CBG21226 [Caenorhabditis briggsae] 1.0E-134
Protein Families
Method ID Description E-Value
ec 6PGL_HUMAN (O95336) 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) 2.0E-8
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.2E-6
Pfam IPR006148 EMBL-EBI Glucosamine/galactosamine-6-phosphate isomerase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178642_AT
aattactacaagaacgctcctggcctacatgaatttgcaagcaatcagatttcaagttcg
gaagcaatgcaaaccagagtctcaaagaattgaggataacttttttgctgactgtttaac
gttttttgataaagtttgcggtcgagtagaaatcaaatctctgctcctctgctcaaaaac
catcctgttcccttggcaacttgcaccaaagtcactgataaagctatcagaacttcaagg
tcttcaaaacttgattttggaaaatatgacaaccttcgatccattctcaagttttctgaa
acttcccactaagaatctggcgagtttgcaattccgattagatcccaggcatcggatgga
tattgatcaaatgacaatggcaccagtaaatggatcacttctaaaaattttatcatcatc
tgcagtttaccgtcttgatttctccgcttacacggaagtttctcaaattgtcagtgccat
cgatgcagttgacatgtgcttttttatcgagaaatggcactattcccccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTACTACAAGAACGCTCCTGGCC 594 171 423 Antisense
CGCTCCTGGCCTACATGAATTTGCA 495 255 437 Antisense
TAGAAATCAAATCTCTGCTCCTCTG 473 651 569 Antisense
CTCAAAAACCATCCTGTTCCCTTGG 180 227 594 Antisense
TTCCCTTGGCAACTTGCACCAAAGT 139 697 610 Antisense
ACAACCTTCGATCCATTCTCAAGTT 482 113 691 Antisense
AATCTGGCGAGTTTGCAATTCCGAT 106 169 736 Antisense
CAATTCCGATTAGATCCCAGGCATC 582 179 751 Antisense
TATCATCATCTGCAGTTTACCGTCT 531 659 833 Antisense
CTCAAATTGTCAGTGCCATCGATGC 281 227 884 Antisense
CGAGAAATGGCACTATTCCCCCAAA 238 243 930 Antisense
Sequence Source Affymetrix Proprietary Database