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[178641_s_at]

Description ZK822.1 /REP_DB=WormBase Gene ID /WP=CE06644 /TR=Q23613 /GB=CAA98066.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 3.5
(-3)
A 		5
(0.1)
A 		4.7
(-0.5)
A 		6.4
(3)
A 		3
B 3.3
(-3)
A 		5.2
(3)
A 		4.3
(0.2)
A 		3.7
(-1.7)
A 		2
C 2.9
(-3)
A 		6.2
(-2.8)
A 		3.1
(-3)
A 		113.1
(3)
A 		110
avr 3.2
(-3) 		5.5
(-2.6) 		4
(-2.9) 		41.1
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 38.1
(1.7)
A 		3.9
(-3)
A 		6.1
(-2.7)
A 		6.4
(-2.7)
A 		6.7
(-2.6)
A 		47.4
(3)
A 		44
B 22.3
(-0.2)
A 		11
(-1.8)
A 		13.8
(-1.4)
A 		6.2
(-2.5)
A 		3
(-3)
A 		44.3
(3)
A 		41
C 16.6
(-1.7)
A 		24.4
(-1)
A 		3.9
(-3)
A 		14.1
(-2)
A 		5.2
(-2.9)
A 		64
(3)
A 		60
avr 25.7
(-0.4) 		13.1
(-2) 		7.9
(-2.6) 		8.9
(-2.5) 		5
(-3) 		51.9
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.3
(3)
A 		1.1
(0)
A 		1.2
(1.5)
A 		0.9
(-3)
A 		0
B 1
(-0.6)
A 		1.3
(3)
A 		1
(-0.6)
A 		0.8
(-3)
A 		1
C 1
(-3)
A 		1.8
(-2.7)
A 		1.1
(-3)
A 		19.1
(3)
A 		18
avr 1.1
(-3) 		1.4
(-2.7) 		1.1
(-3) 		6.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7
(0.4)
A 		1.4
(-2.9)
A 		1.3
(-3)
A 		1.6
(-2.8)
A 		2
(-2.6)
A 		11.5
(3)
A 		10
B 7.7
(-0.5)
A 		3.7
(-2)
A 		3.4
(-2.1)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		16.5
(3)
A 		15
C 6.2
(-1.5)
A 		7.4
(-1.1)
A 		1
(-3)
A 		2.8
(-2.5)
A 		1.7
(-2.8)
A 		21.4
(3)
A 		20
avr 7
(-0.8) 		4.2
(-2) 		1.9
(-2.9) 		2
(-2.8) 		1.6
(-3) 		16.5
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178641_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9126
Sequence Type Exemplar sequence
Representative Public ID ZK822.1 NCBI
Target Description ZK822.1 /REP_DB=WormBase Gene ID /WP=CE06644 /TR=Q23613 /GB=CAA98066.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069855(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069855 NCBI Caenorhabditis elegans ZK822.1 (ZK822.1) mRNA, complete cds. 11/11 None
SNAP00000037314 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11918116:11922084:-1 11/11 None
GENEFINDER00000037325 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11918116:11922084:-1 11/11 None
ZK822.1 ENSEMBL cdna:known chromosome:CEL140:IV:11918080:11921569:-1 gene:ZK822.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11918121-11921575(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK822.1
Entrez Gene 178123 Entrez gene
SwissProt Q23613 EMBL-EBI
WormBase CE06644 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98066 Hypothetical protein ZK822.1 [Caenorhabditis elegans] ref|NP_502256.1| ZK822.1 [Caenorhabditis elegans] 0.0
blast CAE62145 Hypothetical protein CBG06191 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178641_S_AT
atataatgcttatgaacctccgccagcttctagaacaacgactacaacaattgttgcttc
aactcaagatatttcaaataatgtgcacagtcctcacgggacaccagtcttcacacgaag
aataattattcctgtcaaaggaaatgcatatgatattgtaccagaaggcaccactgcaaa
catagttccagcgaatattccacagatgggaagagttcggaagctcgaaagagcattctc
ggcggaaagtcggaatactgtagattctctgcacgacagagaagaacaacgaagagagag
aagagatcatgttgaaggaggagttgagagaaggcagagcaagattcaaagatctcaacc
agtctcacggctcaagcaaccatcggtgcaattgtcgaaatttagaacaattgaaaataa
cggagcaaaccgcgagccaccatcttcatcaatcttgcgcccacgaaccttagaacctca
gacatcaattccacgaatcaccacatcaccaccagaatcgagaattccaactccatcgag
tcgtcacggtaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATAATGCTTATGAACCTCCGCCA 334 19 2058 Antisense
TCCGCCAGCTTCTAGAACAACGACT 515 593 2076 Antisense
AATAATGTGCACAGTCCTCACGGGA 402 171 2134 Antisense
AGGCACCACTGCAAACATAGTTCCA 662 53 2223 Antisense
AGAGCATTCTCGGCGGAAAGTCGGA 57 71 2287 Antisense
AATACTGTAGATTCTCTGCACGACA 590 171 2311 Antisense
TCAAAGATCTCAACCAGTCTCACGG 512 629 2403 Antisense
GGCTCAAGCAACCATCGGTGCAATT 133 537 2426 Antisense
CACGAACCTTAGAACCTCAGACATC 1 201 2519 Antisense
TCAATTCCACGAATCACCACATCAC 660 633 2542 Antisense
AACTCCATCGAGTCGTCACGGTAAT 148 143 2586 Antisense
Sequence Source Affymetrix Proprietary Database