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[178640_at]

Description C54C8.5 /REP_DB=WormBase Gene ID /WP=CE08968 /TR=O17708 /GB=CAB05467.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.6
(-2.8)
A 		5.5
(-1.7)
A 		9.3
(3)
A 		4.4
(-3)
A 		5
B 3.9
(-1.6)
A 		8.7
(3)
A 		6.7
(1.1)
A 		2.4
(-3)
A 		6
C 5.3
(-1.3)
A 		10.1
(3)
A 		5.1
(-1.5)
A 		3.4
(-3)
A 		7
avr 4.6
(-1.5) 		8.1
(3) 		7
(1.6) 		3.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 7.3
(3)
A 		3.9
(-2.7)
A 		4.3
(-2)
A 		3.7
(-3)
A 		5.5
(0)
A 		3.9
(-2.7)
A 		4
B 5.7
(3)
A 		3.8
(-0)
A 		3.1
(-1.1)
A 		3.2
(-0.9)
A 		2.2
(-2.5)
A 		1.9
(-3)
A 		4
C 6.6
(1.1)
A 		5.3
(-0.2)
A 		8.6
(3)
A 		4.9
(-0.6)
A 		4.1
(-1.4)
A 		2.4
(-3)
A 		6
avr 6.5
(3) 		4.3
(-0.5) 		5.3
(1.1) 		3.9
(-1.1) 		3.9
(-1.1) 		2.7
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.7
(0.7)
A 		1.2
(-1)
A 		2.4
(3)
A 		0.6
(-3)
A 		2
B 1.3
(-0.2)
A 		2.2
(3)
A 		1.5
(0.5)
A 		0.5
(-3)
A 		2
C 1.7
(-0.1)
A 		2.9
(3)
A 		1.8
(0.1)
A 		0.6
(-3)
A 		2
avr 1.6
(1) 		2.1
(3) 		1.9
(2.2) 		0.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.3
(0)
A 		1.4
(0.8)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.7
(3)
A 		1
(-2.3)
A 		1
B 2
(3)
A 		1.3
(-0.2)
A 		0.7
(-3)
A 		0.8
(-2.5)
A 		0.9
(-2.1)
A 		0.7
(-3)
A 		1
C 2.4
(3)
A 		1.6
(0)
A 		2.2
(2.3)
A 		1
(-2.3)
A 		1.3
(-1.1)
A 		0.8
(-3)
A 		2
avr 1.9
(3) 		1.4
(0.3) 		1.3
(-0.3) 		0.9
(-2.5) 		1.3
(-0.3) 		0.8
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.604
Sequence Type Exemplar sequence
Representative Public ID C54C8.5 NCBI
Target Description C54C8.5 /REP_DB=WormBase Gene ID /WP=CE08968 /TR=O17708 /GB=CAB05467.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060759(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060759 NCBI Caenorhabditis elegans C54C8.5 (C54C8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000034221 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12458450:12462885:1 11/11 None
SNAP00000034209 ENSEMBL cdna:SNAP chromosome:CEL140:I:12461933:12462885:1 11/11 None
C54C8.5 ENSEMBL cdna:known chromosome:CEL140:I:12461933:12462885:1 gene:C54C8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12461863-12462816(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54C8.5
Entrez Gene 183771 Entrez gene
SwissProt O17708 EMBL-EBI
WormBase CE08968 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05466 Hypothetical protein C54C8.4 [Caenorhabditis elegans] ref|NP_493159.1| C54C8.4 [Caenorhabditis elegans] 0.0
blast CAB05467 Hypothetical protein C54C8.5 [Caenorhabditis elegans] ref|NP_493160.1| C54C8.5 [Caenorhabditis elegans] 1.0E-141
blast CAB05467 Hypothetical protein C54C8.5 [Caenorhabditis elegans] ref|NP_493160.1| C54C8.5 [Caenorhabditis elegans] 1.0E-140
blast CAA15837 Hypothetical protein C47F8.4 [Caenorhabditis elegans] ref|NP_493114.1| C47F8.4 [Caenorhabditis elegans] 1.0E-114
blast CAA15837 Hypothetical protein C47F8.4 [Caenorhabditis elegans] ref|NP_493114.1| C47F8.4 [Caenorhabditis elegans] 1.0E-113
blast CAI99629 beta-1,3-glucuronosyltransferase [Caenorhabditis briggsae] 8.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 8.9E-126
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 8.9E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178640_AT
ttatggaatcgtgccagccgttcgagaattactagaaaaaaccaacctatcgtataccta
catggcccacaagactgcaaagggatacccaacgcgtgggtggtatcagcgaacgatggc
gttgaggtacattcgatcgtcctggtcgaaaattctgagggagcatgatgcagttgtgta
ctttgccgatgatgataatgcgtatgatgtgaggctatttactgattacattaggaatgt
gaatactttgggagtttgggctgttggccttgtcggtggagccatcgtagaagctcccaa
agtcgtcaaccacaaagtgactggattcaacgtccgatggagccctaaccgacgatttgc
agtagacatggcaggctttgcgatcaacctgaaatacatcctaaactccgacgcagtatt
cggtaaagactgcaaacgaggagagggcgctccggaaacgtgtcttattgaggatatagg
cttggatctagaggatatcaagccatttggctatgatgcgacgaaggtccaggatataat
ggtgtggcataccaaaacgagtccccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGGAATCGTGCCAGCCGTTCGA 437 681 168 Antisense
GACTGCAAAGGGATACCCAACGCGT 411 373 240 Antisense
AACGCGTGGGTGGTATCAGCGAACG 101 145 258 Antisense
TGAGGTACATTCGATCGTCCTGGTC 446 567 290 Antisense
CCTTGTCGGTGGAGCCATCGTAGAA 121 269 435 Antisense
ATCGTAGAAGCTCCCAAAGTCGTCA 516 35 451 Antisense
ATTCAACGTCCGATGGAGCCCTAAC 576 9 492 Antisense
GAGCCCTAACCGACGATTTGCAGTA 42 385 507 Antisense
CCTGAAATACATCCTAAACTCCGAC 58 263 555 Antisense
GCGCTCCGGAAACGTGTCTTATTGA 42 287 614 Antisense
TGTGGCATACCAAAACGAGTCCCCC 332 555 710 Antisense
Sequence Source Affymetrix Proprietary Database