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[178639_at]

Description T02D1.3 /REP_DB=WormBase Gene ID /WP=CE16323 /TR=O45729 /GB=CAB05908.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 22      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 36.6
(1.3)
P 		11
(-3)
A 		19.3
(-1.6)
A 		46.5
(3)
P 		36
B 67.8
(3)
P 		11.9
(-2.1)
A 		1.5
(-3)
A 		54.6
(1.8)
P 		66
C 41.3
(0.6)
A 		23.6
(-1)
A 		1.1
(-3)
A 		68.1
(3)
P 		67
avr 48.6
(2) 		15.5
(-2) 		7.3
(-3) 		56.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 48.2
(3)
P 		9.3
(-3)
A 		38.2
(1.5)
A 		23.6
(-0.8)
A 		33.8
(0.8)
A 		27
(-0.3)
M 		39
B 13.7
(-3)
A 		25.8
(0.3)
A 		18.3
(-1.8)
A 		28.2
(0.9)
A 		35.8
(3)
P 		25.9
(0.3)
P 		22
C 7
(-2.1)
A 		33.2
(2.9)
A 		33.5
(3)
A 		2.3
(-3)
A 		13
(-0.9)
A 		13.2
(-0.9)
A 		31
avr 23
(-0.5) 		22.8
(-0.6) 		30
(3) 		18
(-3) 		27.5
(1.8) 		22
(-1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 13.3
(3)
P 		2.4
(-3)
A 		5
(-1.6)
A 		6.8
(-0.6)
P 		11
B 21.6
(3)
P 		2.9
(-2.3)
A 		0.3
(-3)
A 		11.6
(0.2)
P 		21
C 13.7
(3)
A 		6.8
(-0.1)
A 		0.4
(-3)
A 		11.5
(2)
P 		13
avr 16.2
(3) 		4
(-2.1) 		1.9
(-3) 		10
(0.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.9
(1.9)
P 		3.3
(-3)
A 		8.3
(1.3)
A 		6
(-0.7)
A 		10.2
(3)
A 		6.6
(-0.1)
M 		7
B 4.8
(-2.8)
A 		8.6
(-0.5)
A 		4.4
(-3)
A 		7.5
(-1.2)
A 		14.5
(3)
P 		9.6
(0.1)
P 		10
C 2.6
(-1.7)
A 		10.1
(3)
A 		8.5
(2)
A 		0.5
(-3)
A 		4.2
(-0.7)
A 		4.4
(-0.6)
A 		10
avr 5.4
(-2.1) 		7.3
(0.2) 		7.1
(-0.1) 		4.7
(-3) 		9.6
(3) 		6.9
(-0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8793
Sequence Type Exemplar sequence
Representative Public ID T02D1.3 NCBI
Target Description T02D1.3 /REP_DB=WormBase Gene ID /WP=CE16323 /TR=O45729 /GB=CAB05908.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070702(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070702 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-15) (sru-15) mRNA, complete cds. 11/11 None
T02D1.3 ENSEMBL cdna:known chromosome:CEL140:IV:17396165:17397446:1 gene:T02D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17396170-17397452(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-15
Ensembl T02D1.3
Entrez Gene 187983 Entrez gene
SwissProt O45729 EMBL-EBI
WormBase CE16323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05908 Hypothetical protein T02D1.3 [Caenorhabditis elegans] ref|NP_503103.1| Serpentine Receptor, class U family member (sru-15) [Caenorhabditis elegans] 1.0E-180
blast CAE59870 Hypothetical protein CBG03348 [Caenorhabditis briggsae] 1.0E-104
blast CAA98129 Hypothetical protein F53B2.4 [Caenorhabditis elegans] ref|NP_502397.2| Serpentine Receptor, class U family member (sru-13) [Caenorhabditis elegans] 2.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.2E-60
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503103.1 7 25-47,67-89,112-134,155-177,207-226,247-269,279-301
T02D1.3 7 25-47,67-89,112-134,155-177,207-226,247-269,279-301
Sequence
Target Sequence 
>C. ELEGANS:178639_AT
tatacttcaactacactgcgtttctttttccattattgttatcggttctaagactcattc
cgtttaactatcctactaggcaaaaacagctctgctcgaaagttgtagaattttcgattc
cgttcatatttctctatccgtgcatttttacatttactctcaatccggcgcttggactgt
gtcgacagtacaatgttttgtaccagtttgggcatatttatgtgtttttcattaacaatt
ggtttaatgtgaaactagacaattttctggtaccaaatgcgattttctggttatttcttt
gtacaataaccaatgttatttcatatagaaaaatgaaagttctaagaaataagcaaaaaa
gtaaaaaacttcaaagagctgagcggtcattaactcttacaacagtctctatgctatctg
cccatatcaacaatttaatttttgttatgatttacatgttttacttctcagtatctgctt
accttgcggcactgagaccatttggtaacaatttcgatatagttttttccacaatgatat
tctattcgactcatccggttttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACTTCAACTACACTGCGTTTCT 57 661 365 Antisense
ACTGCGTTTCTTTTTCCATTATTGT 608 97 379 Antisense
GACTCATTCCGTTTAACTATCCTAC 228 373 416 Antisense
TTTTCGATTCCGTTCATATTTCTCT 410 677 475 Antisense
ATATTTCTCTATCCGTGCATTTTTA 473 19 490 Antisense
TTTTTACATTTACTCTCAATCCGGC 497 675 509 Antisense
GAGCTGAGCGGTCATTAACTCTTAC 692 379 740 Antisense
ACAACAGTCTCTATGCTATCTGCCC 658 111 763 Antisense
ACTTCTCAGTATCTGCTTACCTTGC 607 103 827 Antisense
CTTGCGGCACTGAGACCATTTGGTA 241 215 847 Antisense
CTATTCGACTCATCCGGTTTTCAAA 405 223 906 Antisense
Sequence Source Affymetrix Proprietary Database