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[178638_at]

Description D2089.2 /REP_DB=WormBase Gene ID /WP=CE00937 /TR=Q18997 /GB=CAA85409.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 9.9
(-2.8)
A 		29.3
(-0.4)
A 		8.7
(-3)
A 		55.4
(3)
A 		47
B 25.9
(-3)
A 		34.6
(-1.8)
A 		70.6
(3)
A 		46.7
(-0.2)
A 		45
C 49.6
(3)
A 		27
(-2)
A 		24.9
(-2.4)
A 		22.4
(-3)
A 		27
avr 28.5
(-3) 		30.3
(-2.2) 		34.7
(-0.1) 		41.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 51.6
(-1.1)
A 		40.1
(-2.4)
A 		48.6
(-1.4)
M 		35.1
(-3)
A 		38.1
(-2.6)
A 		86.1
(3)
M 		51
B 44.5
(0.1)
M 		66.6
(1.7)
M 		28.6
(-1.1)
A 		2.2
(-3)
A 		85.2
(3)
P 		74
(2.2)
P 		83
C 46.5
(-2.2)
P 		98.9
(3)
P 		38
(-3)
A 		54.3
(-1.4)
A 		60.7
(-0.8)
P 		79.8
(1.1)
P 		61
avr 47.5
(-0.9) 		68.5
(1.6) 		38.4
(-2) 		30.5
(-3) 		61.3
(0.7) 		80
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.6
(-1.7)
A 		6.4
(1.2)
A 		2.3
(-3)
A 		8.1
(3)
A 		6
B 8.3
(-3)
A 		8.5
(-2.9)
A 		16.4
(3)
A 		10
(-1.7)
A 		8
C 16.4
(3)
A 		7.8
(-1.1)
A 		8.7
(-0.7)
A 		3.8
(-3)
A 		13
avr 9.4
(3) 		7.6
(-2.1) 		9.1
(2.1) 		7.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 9.5
(-2.7)
A 		14.3
(-0.3)
A 		10.6
(-2.2)
M 		8.9
(-3)
A 		11.5
(-1.7)
A 		21
(3)
M 		12
B 15.5
(-0.4)
M 		22.2
(0.8)
M 		6.9
(-1.9)
A 		0.6
(-3)
A 		34.6
(3)
P 		27.6
(1.8)
P 		34
C 17.2
(-0.8)
P 		30.2
(3)
P 		9.7
(-3)
A 		10.9
(-2.6)
A 		19.6
(-0.1)
P 		26.7
(2)
P 		21
avr 14.1
(-0.6) 		22.2
(2) 		9.1
(-2.2) 		6.8
(-3) 		21.9
(2) 		25.1
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178638_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3187
Sequence Type Exemplar sequence
Representative Public ID D2089.2 NCBI
Target Description D2089.2 /REP_DB=WormBase Gene ID /WP=CE00937 /TR=Q18997 /GB=CAA85409.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063901 NCBI Caenorhabditis elegans D2089.2 (D2089.2) mRNA, complete cds. 11/11 None
SNAP00000043962 ENSEMBL cdna:SNAP chromosome:CEL140:II:10660158:10662684:-1 10/11 None
GENEFINDER00000043973 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10660285:10660870:-1 11/11 None
D2089.2 ENSEMBL cdna:known chromosome:CEL140:II:10660285:10660870:-1 gene:D2089.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10660281-10660867(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2089.2
Entrez Gene 183961 Entrez gene
SwissProt Q18997 EMBL-EBI
WormBase CE00937 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85409 Hypothetical protein D2089.2 [Caenorhabditis elegans] ref|NP_496302.1| D2089.2 [Caenorhabditis elegans] 1.0E-106
blast CAA85409 Hypothetical protein D2089.2 [Caenorhabditis elegans] ref|NP_496302.1| D2089.2 [Caenorhabditis elegans] 4.0E-86
blast CAA85410 Hypothetical protein D2089.3 [Caenorhabditis elegans] ref|NP_496303.1| D2089.3 [Caenorhabditis elegans] 3.0E-64
blast AAZ86783 IP04007p [Drosophila melanogaster] gb|AAF54269.1| CG11755-PA [Drosophila melanogaster] ref|NP_649815.1| CG11755-PA [Drosophila melanogaster] 3.0E-9
blast CAG12305 unnamed protein product [Tetraodon nigroviridis] 8.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.9E-16
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.4E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496302.1 1 144-166
D2089.2 1 144-166
SNAP00000043962 1 224-246
GENEFINDER00000043973 1 144-166
Sequence
Target Sequence 
>C. ELEGANS:178638_AT
acgatacgagttccgacagtctgatcaagccatgctcttgtagcggaacagtcgcctacg
ttcacaatggatgcttggagcaatgggtccgtacaacatcaaacattcaatgtaccatat
gtcaggatatgtttgagttgattccggcaggattgaaagattggaacaaaattactctgc
cgagaccactttcggaacagctcgaagactatatggaattcggatgtactcttgcgtggg
tggtgtatatgctgagattcgcatatgtcggacttcgttatggaagccgttcgatgatcg
agaatgtcgatatggctattggaacaggaatgatgcgcagcttttggtggatgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGATACGAGTTCCGACAGTCTGAT 38 95 104 Antisense
TCCGACAGTCTGATCAAGCCATGCT 509 595 115 Antisense
AAGCCATGCTCTTGTAGCGGAACAG 507 147 130 Antisense
ACAGTCGCCTACGTTCACAATGGAT 366 107 151 Antisense
GGAGCAATGGGTCCGTACAACATCA 454 519 180 Antisense
ATGTTTGAGTTGATTCCGGCAGGAT 170 47 232 Antisense
AAATTACTCTGCCGAGACCACTTTC 16 117 272 Antisense
AATTCGGATGTACTCTTGCGTGGGT 54 177 320 Antisense
GAGATTCGCATATGTCGGACTTCGT 463 395 357 Antisense
GTTATGGAAGCCGTTCGATGATCGA 359 447 380 Antisense
GATGCGCAGCTTTTGGTGGATGACA 708 413 435 Antisense
Sequence Source Affymetrix Proprietary Database