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[178637_at]

Description T26H8.3 /REP_DB=WormBase Gene ID /WP=CE18970 /TR=Q9XUN1 /GB=CAB04859.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 12      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 25.2
(-1.4)
A 		29.5
(-1)
A 		5.1
(-3)
A 		79.2
(3)
A 		74
B 35.5
(3)
A 		10.3
(-2.1)
A 		13.7
(-1.4)
A 		5.8
(-3)
A 		30
C 4.7
(-2.7)
A 		8.4
(-2.4)
A 		1.3
(-3)
A 		70.5
(3)
A 		69
avr 21.8
(-1) 		16.1
(-1.7) 		6.7
(-3) 		51.8
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 6
(-2.7)
A 		21.3
(1.3)
A 		5.3
(-2.9)
A 		4.8
(-3)
A 		27.7
(3)
A 		20.5
(1.1)
A 		23
B 4.2
(-2.8)
A 		4.8
(-2.6)
A 		22.1
(2.7)
A 		23.2
(3)
A 		3.4
(-3)
A 		4.9
(-2.5)
A 		20
C 3.6
(-2.8)
A 		39
(3)
A 		2.8
(-2.9)
A 		2.4
(-3)
A 		4
(-2.7)
A 		18.1
(-0.4)
A 		37
avr 4.6
(-3) 		21.7
(3) 		10.1
(-1.1) 		10.1
(-1.1) 		11.7
(-0.5) 		14.5
(0.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.2
(1.6)
A 		6.4
(-0)
A 		1.3
(-3)
A 		11.6
(3)
A 		10
B 11.3
(3)
A 		2.5
(-2.2)
A 		3.2
(-1.8)
A 		1.2
(-3)
A 		10
C 1.5
(-2.4)
A 		2.4
(-2)
A 		0.4
(-3)
A 		11.9
(3)
A 		12
avr 7.3
(2.2) 		3.8
(-1) 		1.6
(-3) 		8.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.1
(-3)
A 		7.6
(2.3)
A 		1.2
(-2.9)
A 		1.2
(-2.9)
A 		8.4
(3)
A 		5
(0.2)
A 		7
B 1.5
(-2.9)
A 		1.6
(-2.8)
A 		5.4
(2)
A 		6.2
(3)
A 		1.4
(-3)
A 		1.8
(-2.5)
A 		5
C 1.3
(-2.6)
A 		11.9
(3)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		1.3
(-2.6)
A 		6.1
(-0.1)
A 		11
avr 1.3
(-3) 		7
(3) 		2.4
(-1.8) 		2.6
(-1.6) 		3.7
(-0.5) 		4.3
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14655
Sequence Type Exemplar sequence
Representative Public ID T26H8.3 NCBI
Target Description T26H8.3 /REP_DB=WormBase Gene ID /WP=CE18970 /TR=Q9XUN1 /GB=CAB04859.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074390(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074390 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-49) (srx-49) mRNA, complete cds. 11/11 None
T26H8.3 ENSEMBL cdna:known chromosome:CEL140:V:15302110:15304476:-1 gene:T26H8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15302109-15304476(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srx-49
Ensembl T26H8.3
Entrez Gene 188962 Entrez gene
SwissProt Q9XUN1 EMBL-EBI
WormBase CE18970 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04859 Hypothetical protein T26H8.3 [Caenorhabditis elegans] ref|NP_506791.1| Serpentine Receptor, class X family member (srx-49) [Caenorhabditis elegans] 7.0E-81
blast CAB04860 Hypothetical protein T26H8.2 [Caenorhabditis elegans] ref|NP_506793.2| Serpentine Receptor, class X family member (srx-48) [Caenorhabditis elegans] 1.0E-30
blast CAB03338 Hypothetical protein T10H4.9 [Caenorhabditis elegans] ref|NP_506786.2| Serpentine Receptor, class X family member (srx-51) [Caenorhabditis elegans] 1.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506791.1 2 7-29,106-128
T26H8.3 2 7-29,106-128
Sequence
Target Sequence 
>C. ELEGANS:178637_AT
agctttggtgatttttccgcttgctttgatcggtgttctggcaaactggtcagttgcgat
tctgatccagaaactcccatcccttaagaactcttttggaatgctcacaacttctcaatc
aatcggagacgcagttcattccacaacttttgcactctttgtgtctccaatgtgcttttt
cgacatgaaatacctaaaatcatattccttcataaccgatagttgcacattgacttacaa
agaaactatatctgtttttgtattcacagagtctccaacatgtgatattgtatggcatgt
gaactatttgaagtacaattcagtagttattacgatagctatcatcaatgtgatcgctgt
tgcaaaaattaaaagtttcaaagcaaaaatttcaacattttcaatccaaccagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTTGGTGATTTTTCCGCTTGCT 132 77 36 Antisense
CGCTTGCTTTGATCGGTGTTCTGGC 374 253 53 Antisense
GGTGTTCTGGCAAACTGGTCAGTTG 212 499 67 Antisense
TGGTCAGTTGCGATTCTGATCCAGA 609 551 82 Antisense
TCCCATCCCTTAAGAACTCTTTTGG 199 597 110 Antisense
AATGCTCACAACTTCTCAATCAATC 65 167 135 Antisense
AATCGGAGACGCAGTTCATTCCACA 225 169 156 Antisense
CAACTTTTGCACTCTTTGTGTCTCC 430 189 179 Antisense
TTGTGTCTCCAATGTGCTTTTTCGA 38 709 194 Antisense
ATCATATTCCTTCATAACCGATAGT 575 29 234 Antisense
TCAACATTTTCAATCCAACCAGCAA 109 631 427 Antisense
Sequence Source Affymetrix Proprietary Database