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[178636_at]

Description F59C6.7 /REP_DB=WormBase Gene ID /WP=CE11468 /TR=Q93833 /GB=CAB01878.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 23      6grp_cgc > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 41
(3)
A 		3.2
(-3)
A 		3.3
(-3)
A 		16
(-1)
A 		38
B 18.4
(3)
A 		1.8
(-3)
A 		4.1
(-2.2)
A 		5.4
(-1.7)
A 		17
C 20.5
(-0.3)
A 		4.1
(-2.7)
A 		1.8
(-3)
A 		43.3
(3)
A 		42
avr 26.6
(3) 		3
(-3) 		3.1
(-3) 		21.6
(1.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 3.5
(-3)
A 		4.8
(-2.3)
A 		3.4
(-3)
A 		15.5
(3)
A 		4.5
(-2.5)
A 		5.8
(-1.8)
A 		12
B 22.7
(3)
A 		5.5
(-2.2)
A 		4.8
(-2.4)
A 		3.9
(-2.7)
A 		4.8
(-2.4)
A 		2.8
(-3)
A 		20
C 10.5
(3)
A 		7.2
(0.4)
A 		4.2
(-2)
A 		4.4
(-1.9)
A 		3
(-3)
A 		4.5
(-1.8)
A 		8
avr 12.2
(3) 		5.8
(-1.7) 		4.1
(-3) 		7.9
(-0.2) 		4.1
(-3) 		4.4
(-2.8) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.9
(3)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		2.3
(-2.3)
A 		14
B 5.9
(3)
A 		0.5
(-3)
A 		1
(-2.4)
A 		1.1
(-2.3)
A 		5
C 6.8
(2.6)
A 		1.2
(-2.5)
A 		0.6
(-3)
A 		7.3
(3)
A 		7
avr 9.2
(3) 		0.8
(-3) 		0.8
(-3) 		3.6
(-1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.7
(-1.1)
A 		0.7
(-3)
A 		3.9
(3)
A 		1.4
(-1.7)
A 		1.4
(-1.7)
A 		3
B 7.9
(3)
A 		1.8
(-2.3)
A 		1.2
(-2.8)
A 		1
(-3)
A 		1.9
(-2.2)
A 		1
(-3)
A 		7
C 3.9
(3)
A 		2.2
(-0.4)
A 		1.1
(-2.6)
A 		0.9
(-3)
A 		1
(-2.8)
A 		1.5
(-1.8)
A 		3
avr 4.2
(3) 		1.9
(-1.3) 		1
(-3) 		1.9
(-1.3) 		1.4
(-2.3) 		1.3
(-2.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1107
Sequence Type Exemplar sequence
Representative Public ID F59C6.7 NCBI
Target Description F59C6.7 /REP_DB=WormBase Gene ID /WP=CE11468 /TR=Q93833 /GB=CAB01878.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060348(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060348 NCBI Caenorhabditis elegans abnormal CHEmotaxis family member (che-13) (che-13) mRNA, complete cds. 9/11 A 
SNAP00000029116 ENSEMBL cdna:SNAP chromosome:CEL140:I:10520445:10523627:-1 11/11 None
GENEFINDER00000029137 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10522910:10523627:-1 9/11 None
F59C6.7 ENSEMBL cdna:known chromosome:CEL140:I:10515214:10523627:-1 gene:F59C6.7 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10523129-10523558(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol che-13
Ensembl F59C6.7
Entrez Gene 186607 Entrez gene
SwissProt Q93833 EMBL-EBI
WormBase CE31704 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586633_AT similar to huntingtin-interacting protein-1 protein interactor cfa
CANINE_2:CFA.8748.1.A1_S_AT similar to huntingtin-interacting protein-1 protein interactor cfa
DROSOPHILA_2:1639369_AT dm
DROSGENOME1:145722_AT dm
CHICKEN:GGAAFFX.24663.2.S1_S_AT similar to huntingtin-interacting protein-1 protein interactor; Vestrogen-related receptor beta like 1 gga
HG-U133B:222520_S_AT estrogen-related receptor beta like 1 hs
HG-U133_PLUS_2:222520_S_AT estrogen-related receptor beta like 1 hs
HG-U133_PLUS_2:218100_S_AT estrogen-related receptor beta like 1 hs
HG-U133A:218100_S_AT estrogen-related receptor beta like 1 hs
HG-U133A_2:218100_S_AT estrogen-related receptor beta like 1 hs
HU35KSUBD:RC_R44412_AT estrogen-related receptor beta like 1 hs
HU35KSUBD:RC_N34038_AT estrogen-related receptor beta like 1 hs
U133_X3P:G8922255_3P_A_AT estrogen-related receptor beta like 1 hs
U133_X3P:G13171100_3P_A_AT estrogen-related receptor beta like 1 hs
U133_X3P:HS.170318.0.S1_3P_A_AT estrogen-related receptor beta like 1 hs
HG-U133_PLUS_2:222519_S_AT estrogen-related receptor beta like 1 hs
HG-U133B:222519_S_AT estrogen-related receptor beta like 1 hs
HG-U95C:65713_AT estrogen-related receptor beta like 1 hs
HG-U95E:91185_AT estrogen-related receptor beta like 1 hs
HU35KSUBC:RC_C20557_AT Estrogen-related receptor beta like 1 hs
MG-U74BV2:113730_AT estrogen-related receptor beta like 1 mm
MG-U74BV2:117188_AT estrogen-related receptor beta like 1 mm
MOE430A:1418929_AT estrogen-related receptor beta like 1 mm
MOUSE430A_2:1418929_AT estrogen-related receptor beta like 1 mm
MOUSE430_2:1418929_AT estrogen-related receptor beta like 1 mm
MOE430B:1446696_AT estrogen-related receptor beta like 1 mm
MOUSE430_2:1446696_AT estrogen-related receptor beta like 1 mm
RAE230B:1380548_AT estrogen-related receptor beta like 1 (predicted) rn
RAT230_2:1380548_AT estrogen-related receptor beta like 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB01878 Hypothetical protein F59C6.7 [Caenorhabditis elegans] ref|NP_492749.2| abnormal CHEmotaxis family member (che-13) [Caenorhabditis elegans] gb|AAM75345.1| intraflagellar transport protein CHE-13 [Caenorhabditis elegans] 0.0
blast T22994 hypothetical protein F59C6.9 - Caenorhabditis elegans 1.0E-140
blast CAE58960 Hypothetical protein CBG02230 [Caenorhabditis briggsae] 1.0E-124
blast CAB01878 Hypothetical protein F59C6.7 [Caenorhabditis elegans] ref|NP_492749.2| abnormal CHEmotaxis family member (che-13) [Caenorhabditis elegans] gb|AAM75345.1| intraflagellar transport protein CHE-13 [Caenorhabditis elegans] 3.0E-58
blast CAB01878 Hypothetical protein F59C6.7 [Caenorhabditis elegans] ref|NP_492749.2| abnormal CHEmotaxis family member (che-13) [Caenorhabditis elegans] gb|AAM75345.1| intraflagellar transport protein CHE-13 [Caenorhabditis elegans] 1.0E-56
blast CAE58958 Hypothetical protein CBG02227 [Caenorhabditis briggsae] 3.0E-37
blast CAE58958 Hypothetical protein CBG02227 [Caenorhabditis briggsae] 2.0E-35
Sequence
Target Sequence 
>C. ELEGANS:178636_AT
gaatcacatttatctcaatccgacacagttggatccgcaattgttgaagatggaccagga
aaagaatatgaaatttatataaaaaacgaagaattggtggataaattgaaacttttgaat
tatgaagatggtttcttgaagcttggcgtcgtatacaaaccgattttgaagtactcgcac
tactttgtaaagtccaaaaacgttggagagcagttctttctgttcacgtcattggcagct
tggttgatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCACATTTATCTCAATCCGACA 566 327 34 Antisense
TCAATCCGACACAGTTGGATCCGCA 597 633 48 Antisense
GTTGGATCCGCAATTGTTGAAGATG 235 437 61 Antisense
GATGGTTTCTTGAAGCTTGGCGTCG 662 407 160 Antisense
GCTTGGCGTCGTATACAAACCGATT 317 287 174 Antisense
AAACCGATTTTGAAGTACTCGCACT 513 125 190 Antisense
GTACTCGCACTACTTTGTAAAGTCC 346 457 204 Antisense
AAACGTTGGAGAGCAGTTCTTTCTG 570 125 231 Antisense
TTCTTTCTGTTCACGTCATTGGCAG 228 691 247 Antisense
GTTCACGTCATTGGCAGCTTGGTTG 416 445 255 Antisense
GTCATTGGCAGCTTGGTTGATCAAA 297 467 261 Antisense
Sequence Source Affymetrix Proprietary Database