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[178635_at]

Description F11A6.2 /REP_DB=WormBase Gene ID /WP=CE17655 /TR=O62149 /GB=CAB04084.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 81      6grp_total > 09      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 358.2
(3)
P 		206.8
(-1.4)
P 		150.3
(-3)
P 		240.1
(-0.4)
P 		208
B 363.1
(3)
P 		121.8
(-2.9)
P 		118.1
(-3)
P 		156.5
(-2.1)
P 		245
C 362.7
(3)
P 		184.6
(-1.8)
P 		139.1
(-3)
P 		196.1
(-1.5)
P 		224
avr 361.3
(3) 		171.1
(-2.1) 		135.8
(-3) 		197.6
(-1.4) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 316.2
(3)
P 		226
(-1.5)
P 		232.4
(-1.2)
P 		213.3
(-2.2)
P 		224.3
(-1.6)
P 		196.6
(-3)
P 		120
B 350.8
(3)
P 		236.5
(-2.2)
P 		298.9
(0.6)
P 		289.8
(0.2)
P 		247.6
(-1.7)
P 		219.3
(-3)
P 		132
C 267.1
(0.1)
P 		241.4
(-0.8)
P 		201.5
(-2.3)
P 		347.6
(3)
P 		180.8
(-3)
P 		226.7
(-1.3)
P 		167
avr 311.4
(3) 		234.6
(-1.7) 		244.3
(-1.1) 		283.6
(1.3) 		217.6
(-2.8) 		214.2
(-3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 130.4
(3)
P 		44.9
(-2.4)
P 		39.3
(-2.7)
P 		35.2
(-3)
P 		95
B 115.8
(3)
P 		30.1
(-2.8)
P 		27.4
(-3)
P 		33.4
(-2.6)
P 		88
C 120.1
(3)
P 		53.1
(-1.6)
P 		48.5
(-1.9)
P 		33.1
(-3)
P 		87
avr 122.1
(3) 		42.7
(-2.4) 		38.4
(-2.7) 		33.9
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 58.3
(-1.1)
P 		80.4
(3)
P 		50.6
(-2.5)
P 		54.1
(-1.9)
P 		67.7
(0.7)
P 		47.9
(-3)
P 		33
B 122.1
(3)
P 		78.7
(-2.3)
P 		72.6
(-3)
P 		76.8
(-2.5)
P 		100.6
(0.4)
P 		81.8
(-1.9)
P 		50
C 99
(3)
P 		73.7
(-0.2)
P 		51.3
(-3)
P 		69.9
(-0.7)
P 		58.5
(-2.1)
P 		75.9
(0.1)
P 		48
avr 93.1
(3) 		77.6
(0.3) 		58.2
(-3) 		66.9
(-1.5) 		75.6
(-0) 		68.5
(-1.2) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1241
Sequence Type Exemplar sequence
Representative Public ID F11A6.2 NCBI
Target Description F11A6.2 /REP_DB=WormBase Gene ID /WP=CE17655 /TR=O62149 /GB=CAB04084.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060574 NCBI Caenorhabditis elegans F11A6.2 (F11A6.2) mRNA, complete cds. 11/11 None
SNAP00000041219 ENSEMBL cdna:SNAP chromosome:CEL140:I:11684208:11690486:-1 11/11 None
GENEFINDER00000041222 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11689155:11695324:-1 11/11 None
F11A6.2 ENSEMBL cdna:known chromosome:CEL140:I:11689196:11690486:-1 gene:F11A6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11689161-11690417(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A6.2
Entrez Gene 184340 Entrez gene
SwissProt O62149 EMBL-EBI
WormBase CE36130 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04084 Hypothetical protein F11A6.2 [Caenorhabditis elegans] ref|NP_492975.2| F11A6.2 [Caenorhabditis elegans] 1.0E-138
blast CAB04084 Hypothetical protein F11A6.2 [Caenorhabditis elegans] ref|NP_492975.2| F11A6.2 [Caenorhabditis elegans] 1.0E-129
blast CAB04754 Hypothetical protein T22H2.5b [Caenorhabditis elegans] ref|NP_492976.2| T22H2.5b [Caenorhabditis elegans] 5.0E-47
blast CAB04755 Hypothetical protein T22H2.5a [Caenorhabditis elegans] ref|NP_492977.2| T22H2.5a [Caenorhabditis elegans] 5.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041222 1 49-71
Sequence
Target Sequence 
>C. ELEGANS:178635_AT
gaccgtcaagcgtgagttccgatgttgtggaggctgctgctatggctgttgtgcatgtgt
cggttgctgtcagcacgattgcgtcgttgaatccccaactctggggacgctaggtactat
tcgccagcggtttggatttctgactactagttttgacgttatggatggaaaaggggcccg
aatcttccgaattgagattccattctggaagttgatgggatttcaggataaggagttttc
gatcaaaaacatcgatgatggcacagaaattggcaagatcatcagaaagacggcacgttt
ggctggcgaacccatcgttttcaaaaaatatacaataaattttcctaccgacctggatgt
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCGTCAAGCGTGAGTTCCGATGT 509 379 297 Antisense
GTTCCGATGTTGTGGAGGCTGCTGC 425 439 312 Antisense
GCTGCTGCTATGGCTGTTGTGCATG 295 297 329 Antisense
TGCATGTGTCGGTTGCTGTCAGCAC 545 577 348 Antisense
ACGATTGCGTCGTTGAATCCCCAAC 641 93 371 Antisense
CCAACTCTGGGGACGCTAGGTACTA 106 277 391 Antisense
AGGTACTATTCGCCAGCGGTTTGGA 358 57 408 Antisense
GCGGTTTGGATTTCTGACTACTAGT 407 293 423 Antisense
GGGCCCGAATCTTCCGAATTGAGAT 173 493 470 Antisense
GAAAGACGGCACGTTTGGCTGGCGA 469 359 581 Antisense
AAATTTTCCTACCGACCTGGATGTG 121 113 633 Antisense
Sequence Source Affymetrix Proprietary Database