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[178633_at]

Description R144.7 /REP_DB=WormBase Gene ID /WP=CE02856 /TR=Q21992 /GB=AAK21455.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 45      4grp_high_8_8 > 56      6grp_total > 40      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 150.9
(3)
P 		100.2
(-3)
P 		142.8
(2)
A 		134.5
(1.1)
P 		51
B 139.1
(-3)
P 		143.3
(-1.8)
P 		141.8
(-2.2)
P 		159.6
(3)
P 		21
C 198.7
(3)
P 		132.4
(-1.5)
P 		148.4
(-0.4)
P 		109.4
(-3)
P 		89
avr 162.9
(3) 		125.3
(-3) 		144.3
(0) 		134.5
(-1.5) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 163.3
(0.7)
P 		162.9
(0.6)
P 		212.3
(3)
P 		198.2
(2.3)
P 		86.6
(-3)
M 		146.9
(-0.1)
P 		126
B 216.8
(3)
P 		182.2
(1.4)
P 		195.1
(2)
P 		214.7
(2.9)
P 		88.5
(-3)
P 		167.4
(0.7)
P 		128
C 117.8
(-1.2)
P 		226.5
(3)
P 		125.8
(-0.9)
P 		185.6
(1.4)
P 		72.7
(-3)
P 		183.5
(1.3)
P 		154
avr 166
(1.3) 		190.5
(2.5) 		177.7
(1.9) 		199.5
(3) 		82.6
(-3) 		165.9
(1.3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 54.9
(3)
P 		21.8
(-2.6)
P 		37.3
(-0)
A 		19.7
(-3)
P 		35
B 44.4
(3)
P 		35.4
(-1.7)
P 		32.8
(-3)
P 		34
(-2.4)
P 		12
C 65.8
(3)
P 		38.1
(-0.5)
P 		51.7
(1.2)
P 		18.4
(-3)
P 		47
avr 55
(3) 		31.8
(-1.5) 		40.6
(0.2) 		24
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 30.1
(-2.2)
P 		57.9
(3)
P 		46.2
(0.8)
P 		50.3
(1.6)
P 		26.1
(-3)
M 		35.8
(-1.2)
P 		32
B 75.4
(3)
P 		60.7
(0.8)
P 		47.4
(-1.3)
P 		56.9
(0.2)
P 		36
(-3)
P 		62.4
(1)
P 		39
C 43.7
(-0.3)
P 		69.1
(3)
P 		32
(-1.9)
P 		37.3
(-1.2)
P 		23.5
(-3)
P 		61.4
(2)
P 		46
avr 49.7
(0.7) 		62.6
(3) 		41.9
(-0.6) 		48.2
(0.5) 		28.5
(-3) 		53.2
(1.3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178633_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7635
Sequence Type Exemplar sequence
Representative Public ID R144.7 NCBI
Target Description R144.7 /REP_DB=WormBase Gene ID /WP=CE02856 /TR=Q21992 /GB=AAK21455.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065662(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065662 NCBI Caenorhabditis elegans R144.11 (R144.11) mRNA, complete cds. 10/11 None
SNAP00000019422 ENSEMBL cdna:SNAP chromosome:CEL140:III:5007161:5008792:-1 10/11 None
GENEFINDER00000019436 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5007161:5008792:-1 10/11 None
R144.11 ENSEMBL cdna:known chromosome:CEL140:III:5007068:5008792:-1 gene:R144.11 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5007283-5017610(-) 99.78 100.0
Public Domain and Genome References
Gene Title
Ensembl R144.11
Entrez Gene 175679 Entrez gene
SwissProt Q95QB7 EMBL-EBI
WormBase CE28949 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498063 R144.11 [Caenorhabditis elegans] gb|AAK93858.1| Hypothetical protein R144.11 [Caenorhabditis elegans] 1.0E-150
blast CAE70086 Hypothetical protein CBG16527 [Caenorhabditis briggsae] 1.0E-113
blast T16754 hypothetical protein R144.7 - Caenorhabditis elegans 1.0E-113
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498063.1 3 10-29,159-176,186-208
R144.11 3 10-29,159-176,186-208
SNAP00000019422 3 10-29,159-176,186-208
GENEFINDER00000019436 3 10-29,159-176,186-208
Sequence
Target Sequence 
>C. ELEGANS:178633_AT
ggagttccacgtggtattgaccgatgaaatggagccaaaaacgtatggaggactgttcct
gagcagtggtgcagaactacaatttccacttcgaatgacacttgatgacgtggaaactgc
acggagaatcggagccaatttagaagttgatttaggattaagtaaacatcgaagaaaaat
tgaaatgaacagtgaaacaggagatgaaattatttcacgattaatgctctcagatgctgc
caaaatgtttgttgttcaacgagaattacaaattgcaaacagtggcgaatatttctgtgc
tccaatcttcgcgtggattggaatttcatcaatgagttatggagtattaaacggtatcgc
tatgatggctggtccatatttggcaactgtagctgctctcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTCCACGTGGTATTGACCGAT 262 517 3537 Antisense
GAGGACTGTTCCTGAGCAGTGGTGC 108 405 3584 Antisense
GGTGCAGAACTACAATTTCCACTTC 425 501 3604 Antisense
TTCCACTTCGAATGACACTTGATGA 623 699 3620 Antisense
GAAACTGCACGGAGAATCGGAGCCA 54 357 3649 Antisense
CGATTAATGCTCTCAGATGCTGCCA 649 247 3754 Antisense
CGAATATTTCTGTGCTCCAATCTTC 664 253 3822 Antisense
ATCTTCGCGTGGATTGGAATTTCAT 393 29 3841 Antisense
ACGGTATCGCTATGATGGCTGGTCC 691 95 3887 Antisense
ATGGCTGGTCCATATTTGGCAACTG 639 51 3901 Antisense
TTTGGCAACTGTAGCTGCTCTCACA 257 667 3915 Antisense
Sequence Source Affymetrix Proprietary Database