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[178631_s_at]

Description F14B6.2 /REP_DB=WormBase Gene ID /WP=CE25855 /TR=O62162 /GB=CAB04106.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 61      6grp_total > 15      4grp_total > 38      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 560
1 2 3 4 range
A 828.4
(3)
P 		376.8
(-2.1)
P 		292.9
(-3)
P 		581
(0.2)
P 		536
B 815.2
(3)
P 		528
(-0.8)
P 		363.1
(-3)
P 		533.8
(-0.7)
P 		452
C 755.8
(3)
P 		487.6
(-0.3)
P 		268.4
(-3)
P 		533.2
(0.3)
P 		487
avr 799.8
(3) 		464.1
(-1.1) 		308.1
(-3) 		549.3
(-0.1) 		492

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 548.7
(1.7)
P 		610.7
(3)
P 		390.5
(-1.7)
P 		328.7
(-3)
P 		451.6
(-0.4)
P 		365
(-2.2)
P 		282
B 532.8
(2)
P 		564.2
(3)
P 		379.7
(-2.7)
P 		442
(-0.8)
P 		369.4
(-3)
P 		371.8
(-2.9)
P 		195
C 594.9
(1.8)
P 		659.7
(3)
P 		392.2
(-1.8)
P 		374.6
(-2.1)
P 		345
(-2.7)
P 		327.3
(-3)
P 		332
avr 558.8
(1.8) 		611.5
(3) 		387.5
(-2.2) 		381.8
(-2.4) 		388.7
(-2.2) 		354.7
(-3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 301.6
(3)
P 		81.8
(-2.9)
P 		76.6
(-3)
P 		85
(-2.8)
P 		225
B 259.9
(3)
P 		130.4
(-1.4)
P 		84.1
(-3)
P 		113.8
(-2)
P 		176
C 250.2
(3)
P 		140.2
(-1.1)
P 		93.5
(-2.9)
P 		89.9
(-3)
P 		160
avr 270.6
(3) 		117.5
(-1.9) 		84.7
(-3) 		96.2
(-2.6) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 101.1
(-2.2)
P 		217.2
(3)
P 		85
(-2.9)
P 		83.4
(-3)
P 		136.3
(-0.6)
P 		88.9
(-2.8)
P 		134
B 185.4
(2.8)
P 		187.8
(3)
P 		92.2
(-3)
P 		117.1
(-1.4)
P 		150.1
(0.6)
P 		138.7
(-0.1)
P 		96
C 220.5
(3)
P 		201.3
(2.2)
P 		99.8
(-2)
P 		75.3
(-3)
P 		111.6
(-1.5)
P 		109.6
(-1.6)
P 		145
avr 169
(1.2) 		202.1
(3) 		92.3
(-3) 		91.9
(-3) 		132.7
(-0.8) 		112.4
(-1.9) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178631_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1221
Sequence Type Exemplar sequence
Representative Public ID F14B6.2 NCBI
Target Description F14B6.2 /REP_DB=WormBase Gene ID /WP=CE25855 /TR=O62162 /GB=CAB04106.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060684 NCBI Caenorhabditis elegans F14B6.2 (F14B6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000017567 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12226617:12230339:-1 9/11 None
F14B6.2 ENSEMBL cdna:known chromosome:CEL140:I:12226563:12230339:-1 gene:F14B6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017557 7/11 Cross Hyb Matching Probes None
SNAP00000017558 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12226547-12230270(-) 97.73 100.0
Public Domain and Genome References
Gene Title
Ensembl F14B6.2
Entrez Gene 173102 Entrez gene
SwissProt O62162 EMBL-EBI
WormBase CE25855 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04106 Hypothetical protein F14B6.2 [Caenorhabditis elegans] ref|NP_493085.1| F14B6.2 [Caenorhabditis elegans] 0.0
blast CAE56213 Hypothetical protein CBG23839 [Caenorhabditis briggsae] 0.0
blast CAE56213 Hypothetical protein CBG23839 [Caenorhabditis briggsae] 1.0E-165
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493085.1 4 41-63,601-623,636-658,671-693
F14B6.2 4 41-63,601-623,636-658,671-693
GENEFINDER00000017567 4 41-63,690-712,719-741,751-773
Sequence
Target Sequence 
>C. ELEGANS:178631_S_AT
cctctgaagctccgtactacgtggagatcaatgatgcggacactgagacggtttacgtgt
ccagtgtgacacccatgtatcgacctgtatttgagaatatgggacatttggagtcaacga
caaagtcctatgatcctttgcacttggagatggaaatcgccaagctcaaggaatcctcaa
cctgccttgcccggatggctttcgacgtttggtgcctttttgtgctattctccactgttc
cgttcataatgggaatctgtgtgccacgctggagcctcttcgtgctccatattgtatttg
atttcttgtttttggtagttggatttgttaccagtttaacaattgccattatgtcaagta
taatgtatttcctgatcgacgagatgacatccgactcgttatttgagtttctgctcgtcg
catttgtcatagatattgtattaatactctacgcgatagtagtcggtatcgcgtaccgat
gctgctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCTGAAGCTCCGTACTACGTGGA 310 267 1616 Antisense
GATGCGGACACTGAGACGGTTTACG 400 413 1648 Antisense
CACCCATGTATCGACCTGTATTTGA 130 201 1685 Antisense
AGTCCTATGATCCTTTGCACTTGGA 381 61 1739 Antisense
AGCTCAAGGAATCCTCAACCTGCCT 375 79 1778 Antisense
GGATGGCTTTCGACGTTTGGTGCCT 363 515 1808 Antisense
TTTGGTGCCTTTTTGTGCTATTCTC 315 667 1823 Antisense
TTCTCCACTGTTCCGTTCATAATGG 6 695 1843 Antisense
CCTCTTCGTGCTCCATATTGTATTT 300 267 1890 Antisense
CTGCTCGTCGCATTTGTCATAGATA 627 237 2026 Antisense
CGGTATCGCGTACCGATGCTGCTGT 12 245 2079 Antisense
Sequence Source Affymetrix Proprietary Database