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[178630_at]

Description F59C6.9 /REP_DB=WormBase Gene ID /WP=CE11472 /TR=Q93835 /GB=CAB01880.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 22      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 134.9
(2.1)
A 		28.7
(-2.3)
A 		11.5
(-3)
A 		157
(3)
A 		146
B 105.1
(3)
A 		39.9
(-0.9)
A 		4.6
(-3)
A 		59.1
(0.3)
A 		101
C 131.8
(3)
A 		18.7
(-3)
A 		40.9
(-1.8)
A 		113.1
(2)
A 		113
avr 123.9
(3) 		29.1
(-2.4) 		19
(-3) 		109.7
(2.2) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 103
(2.4)
A 		40
(-2.4)
A 		111.1
(3)
A 		57.5
(-1)
A 		44.6
(-2)
A 		31.4
(-3)
A 		80
B 87.6
(2)
A 		98.7
(3)
A 		71.6
(0.6)
A 		59
(-0.5)
A 		30.9
(-3)
A 		50.5
(-1.3)
A 		68
C 70
(1.9)
A 		84.8
(3)
A 		38.3
(-0.6)
A 		48.4
(0.2)
A 		6.8
(-3)
A 		77.6
(2.4)
A 		78
avr 86.9
(3) 		74.5
(1.7) 		73.7
(1.7) 		55
(-0.2) 		27.4
(-3) 		53.2
(-0.4) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 49.1
(3)
A 		6.2
(-2.6)
A 		3
(-3)
A 		23
(-0.4)
A 		46
B 33.5
(3)
A 		9.9
(-1.4)
A 		1.1
(-3)
A 		12.6
(-0.9)
A 		32
C 43.6
(3)
A 		5.4
(-3)
A 		14.2
(-1.6)
A 		19.1
(-0.8)
A 		38
avr 42.1
(3) 		7.2
(-2.8) 		6.1
(-3) 		18.2
(-1) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 19
(1.1)
A 		14.2
(-0.6)
A 		24.2
(3)
A 		14.6
(-0.5)
A 		13.5
(-0.9)
A 		7.7
(-3)
A 		17
B 30.5
(2.3)
A 		32.8
(3)
A 		17.4
(-1.6)
A 		15.6
(-2.1)
A 		12.5
(-3)
A 		18.8
(-1.1)
A 		20
C 25.9
(3)
A 		25.9
(3)
A 		9.7
(-1.1)
A 		9.7
(-1.1)
A 		2.2
(-3)
A 		26
(3)
A 		24
avr 25.1
(3) 		24.3
(2.7) 		17.1
(-0.1) 		13.3
(-1.5) 		9.4
(-3) 		17.5
(0.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.896
Sequence Type Exemplar sequence
Representative Public ID F59C6.9 NCBI
Target Description F59C6.9 /REP_DB=WormBase Gene ID /WP=CE11472 /TR=Q93835 /GB=CAB01880.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060348 NCBI Caenorhabditis elegans abnormal CHEmotaxis family member (che-13) (che-13) mRNA, complete cds. 11/11 A 
GENEFINDER00000029134 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10515140:10516402:-1 10/11 None
SNAP00000029113 ENSEMBL cdna:SNAP chromosome:CEL140:I:10515214:10516541:-1 11/11 None
F59C6.7 ENSEMBL cdna:known chromosome:CEL140:I:10515214:10523627:-1 gene:F59C6.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10515144-10517867(-) 91.62 100.0
Public Domain and Genome References
Gene Title
Gene Symbol che-13
Ensembl F59C6.7
Entrez Gene 186607 Entrez gene
SwissProt Q93833 EMBL-EBI
WormBase CE31704 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586633_AT similar to huntingtin-interacting protein-1 protein interactor cfa
CANINE_2:CFA.8748.1.A1_S_AT similar to huntingtin-interacting protein-1 protein interactor cfa
DROSOPHILA_2:1639369_AT dm
DROSGENOME1:145722_AT dm
CHICKEN:GGAAFFX.24663.2.S1_S_AT similar to huntingtin-interacting protein-1 protein interactor; Vestrogen-related receptor beta like 1 gga
HG-U133B:222520_S_AT estrogen-related receptor beta like 1 hs
HG-U133_PLUS_2:222520_S_AT estrogen-related receptor beta like 1 hs
HG-U133_PLUS_2:218100_S_AT estrogen-related receptor beta like 1 hs
HG-U133A:218100_S_AT estrogen-related receptor beta like 1 hs
HG-U133A_2:218100_S_AT estrogen-related receptor beta like 1 hs
HU35KSUBD:RC_R44412_AT estrogen-related receptor beta like 1 hs
HU35KSUBD:RC_N34038_AT estrogen-related receptor beta like 1 hs
U133_X3P:G8922255_3P_A_AT estrogen-related receptor beta like 1 hs
U133_X3P:G13171100_3P_A_AT estrogen-related receptor beta like 1 hs
U133_X3P:HS.170318.0.S1_3P_A_AT estrogen-related receptor beta like 1 hs
HG-U133_PLUS_2:222519_S_AT estrogen-related receptor beta like 1 hs
HG-U133B:222519_S_AT estrogen-related receptor beta like 1 hs
HG-U95C:65713_AT estrogen-related receptor beta like 1 hs
HG-U95E:91185_AT estrogen-related receptor beta like 1 hs
HU35KSUBC:RC_C20557_AT Estrogen-related receptor beta like 1 hs
MG-U74BV2:113730_AT estrogen-related receptor beta like 1 mm
MG-U74BV2:117188_AT estrogen-related receptor beta like 1 mm
MOE430A:1418929_AT estrogen-related receptor beta like 1 mm
MOUSE430A_2:1418929_AT estrogen-related receptor beta like 1 mm
MOUSE430_2:1418929_AT estrogen-related receptor beta like 1 mm
MOE430B:1446696_AT estrogen-related receptor beta like 1 mm
MOUSE430_2:1446696_AT estrogen-related receptor beta like 1 mm
RAE230B:1380548_AT estrogen-related receptor beta like 1 (predicted) rn
RAT230_2:1380548_AT estrogen-related receptor beta like 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB01878 Hypothetical protein F59C6.7 [Caenorhabditis elegans] ref|NP_492749.2| abnormal CHEmotaxis family member (che-13) [Caenorhabditis elegans] gb|AAM75345.1| intraflagellar transport protein CHE-13 [Caenorhabditis elegans] 0.0
blast T22994 hypothetical protein F59C6.9 - Caenorhabditis elegans 1.0E-140
blast CAB01878 Hypothetical protein F59C6.7 [Caenorhabditis elegans] ref|NP_492749.2| abnormal CHEmotaxis family member (che-13) [Caenorhabditis elegans] gb|AAM75345.1| intraflagellar transport protein CHE-13 [Caenorhabditis elegans] 1.0E-140
blast CAE58960 Hypothetical protein CBG02230 [Caenorhabditis briggsae] 1.0E-124
blast CAE58960 Hypothetical protein CBG02230 [Caenorhabditis briggsae] 1.0E-123
blast CAB01878 Hypothetical protein F59C6.7 [Caenorhabditis elegans] ref|NP_492749.2| abnormal CHEmotaxis family member (che-13) [Caenorhabditis elegans] gb|AAM75345.1| intraflagellar transport protein CHE-13 [Caenorhabditis elegans] 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:178630_AT
gcgactgaatcgaagaatccactccaaagcgttctccaaagcaatacggatgcaataact
tggaaacaagaagttgaaagagttgctccacaattgaaaattacattgaaacaggatgca
aaagattggcgtcttcatcttgaacagatgaactcaatgcacaaaaatgttgagcaaaaa
gttggaaacgttggtccttatctcgataatatgtccaaagatattgcaaaagctctggaa
cggatcgcatcaagggaaaaatcactgaacagtcaattggcaagtatgatgagcaaattc
cggcgagcaaccgacacaagagccgagttgagagagaaatataaagcagcttctgttggc
gtgagttctcgaactgaaactctcgatcgtatcagtgatgacattgaacaattgaagcaa
cagattgaggaacagggagcaaaatcaagtgacggagcaccacttgtgaagattaagcaa
gcagtgagcaaattggaagaagaattacagactatgaatgtgcaaattggagttttcgag
caatcgattctcaatacttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGACTGAATCGAAGAATCCACTCC 1 291 382 Antisense
CACTCCAAAGCGTTCTCCAAAGCAA 638 197 401 Antisense
GATTGGCGTCTTCATCTTGAACAGA 417 435 505 Antisense
GAAACGTTGGTCCTTATCTCGATAA 119 359 566 Antisense
AAAGCTCTGGAACGGATCGCATCAA 496 123 610 Antisense
GCAAATTCCGGCGAGCAACCGACAC 28 319 674 Antisense
GAGCAACCGACACAAGAGCCGAGTT 168 391 686 Antisense
CAGCTTCTGTTGGCGTGAGTTCTCG 689 203 728 Antisense
GAAACTCTCGATCGTATCAGTGATG 496 357 757 Antisense
GTGACGGAGCACCACTTGTGAAGAT 218 483 830 Antisense
GAGCAATCGATTCTCAATACTTATT 562 389 919 Antisense
Sequence Source Affymetrix Proprietary Database