[Home] | [Total List]

[178629_at]

Description ZK822.4 /REP_DB=WormBase Gene ID /WP=CE27357 /TR=Q23615 /GB=CAA98068.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 30      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 24      6grp_total > 40      4grp_total > 55      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2261
1 2 3 4 range
A 4390.4
(3)
P 		2884.8
(-2)
P 		2640.3
(-2.9)
P 		2598.1
(-3)
P 		1792
B 4375.5
(3)
P 		2524.7
(-1.9)
P 		2745.8
(-1.4)
P 		2129.6
(-3)
P 		2246
C 3766.1
(3)
P 		2480.2
(-1.7)
P 		2780.4
(-0.6)
P 		2136.1
(-3)
P 		1630
avr 4177.3
(3) 		2629.9
(-1.9) 		2722.2
(-1.6) 		2287.9
(-3) 		1889

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2569
1 2 3 4 5 6 range
A 3508.3
(1.5)
P 		3736.4
(2.1)
P 		4109.6
(3)
P 		3286.7
(1)
P 		1675
(-3)
P 		1967.5
(-2.3)
P 		2435
B 3349.8
(0.8)
P 		3717.9
(1.8)
P 		4165.7
(3)
P 		2611.4
(-1.2)
P 		1936.7
(-3)
P 		2368.5
(-1.8)
P 		2229
C 3033.6
(0.6)
P 		3932.8
(2.9)
P 		3975.8
(3)
P 		3064.4
(0.7)
P 		1596.9
(-3)
P 		2469.5
(-0.8)
P 		2379
avr 3297.2
(1) 		3795.7
(2.3) 		4083.7
(3) 		2987.5
(0.2) 		1736.2
(-3) 		2268.5
(-1.6) 		2348
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1238
1 2 3 4 range
A 1598.6
(3)
P 		626.2
(-1.8)
P 		690.2
(-1.5)
P 		380.3
(-3)
P 		1218
B 1395.3
(3)
P 		623.5
(-1.9)
P 		636.3
(-1.8)
P 		453.8
(-3)
P 		942
C 1246.7
(3)
P 		713.1
(-0.6)
P 		969
(1.1)
P 		360.2
(-3)
P 		887
avr 1413.5
(3) 		654.3
(-1.5) 		765.2
(-0.8) 		398.1
(-3) 		1015

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 850
1 2 3 4 5 6 range
A 646.7
(-1.8)
P 		1328.8
(3)
P 		895
(-0.1)
P 		833.6
(-0.5)
P 		505.5
(-2.8)
P 		479
(-3)
P 		850
B 1165.6
(2.2)
P 		1237.5
(3)
P 		1011.6
(0.5)
P 		691.7
(-3)
P 		786.9
(-2)
P 		883.2
(-0.9)
P 		546
C 1124.4
(2.3)
P 		1200
(3)
P 		1011.9
(1.3)
P 		616.2
(-2.1)
P 		516.7
(-3)
P 		826.7
(-0.3)
P 		683
avr 978.9
(0.5) 		1255.4
(3) 		972.8
(0.4) 		713.8
(-2) 		603
(-3) 		729.6
(-1.8) 		652
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9507
Sequence Type Exemplar sequence
Representative Public ID ZK822.4 NCBI
Target Description ZK822.4 /REP_DB=WormBase Gene ID /WP=CE27357 /TR=Q23615 /GB=CAA98068.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069857 NCBI Caenorhabditis elegans ZK822.4 (ZK822.4) mRNA, complete cds. 11/11 None
GENEFINDER00000037323 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11926128:11931283:1 11/11 None
ZK822.4 ENSEMBL cdna:known chromosome:CEL140:IV:11925993:11928374:1 gene:ZK822.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037317 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11926133-11928346(+) 93.95 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK822.4
Entrez Gene 178125 Entrez gene
SwissProt Q23615 EMBL-EBI
WormBase CE27357 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98068 Hypothetical protein ZK822.4 [Caenorhabditis elegans] ref|NP_502258.1| ZK822.4 [Caenorhabditis elegans] 0.0
blast CAA98068 Hypothetical protein ZK822.4 [Caenorhabditis elegans] ref|NP_502258.1| ZK822.4 [Caenorhabditis elegans] 1.0E-170
blast CAE62147 Hypothetical protein CBG06193 [Caenorhabditis briggsae] 1.0E-105
blast CAE62147 Hypothetical protein CBG06193 [Caenorhabditis briggsae] 3.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.0E-47
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.0E-47
Sequence
Target Sequence 
>C. ELEGANS:178629_AT
gatggcatatgtcaactcgttggatgatgatactagagatatcgtcttcatcttcttcag
aaatctccttccacctcaattcaaaaaatccaagtgcgttgatcaaggaaactttttgac
aaacatgtacaacaaggcatccgactttttcgcaggtagaaataacagaactgatggtga
aggaagcttctggagtggacaaggacaaaatggaaatagcggaggatctggtttctcctc
atttttcaacaatttcaatggacaaggaaatggaaatggaaacggagcacaaaatccaat
gatcggaatgtttaacaattttatgaagaagaacaacattactgccgatgaagctaatgc
agcgatggctgatggtggagcatctattcaaattcttccagccatttcagctggttgggg
tgatgttgctcaagtgaaaattggcggtgatttcaagattgctgtcgaggaggaaacgaa
aaccaccaaaaagaataagaagcaacaacaacaagcaaacaaaaataagaataagaataa
gaaaaagacaacaattgcaccagaagctgctatcgatgccaacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCATATGTCAACTCGTTGGAT 421 407 735 Antisense
ACTAGAGATATCGTCTTCATCTTCT 568 101 766 Antisense
CATCTTCTTCAGAAATCTCCTTCCA 474 213 783 Antisense
CTCCTTCCACCTCAATTCAAAAAAT 479 235 799 Antisense
AACAAGGCATCCGACTTTTTCGCAG 349 135 865 Antisense
GGAGGATCTGGTTTCTCCTCATTTT 158 517 955 Antisense
GAACAACATTACTGCCGATGAAGCT 253 353 1065 Antisense
TTCAAATTCTTCCAGCCATTTCAGC 37 687 1121 Antisense
GCTGGTTGGGGTGATGTTGCTCAAG 265 293 1144 Antisense
GGCGGTGATTTCAAGATTGCTGTCG 486 541 1177 Antisense
AGAAGCTGCTATCGATGCCAACATC 114 73 1296 Antisense
Sequence Source Affymetrix Proprietary Database