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[178627_s_at]

Description D2013.3 /REP_DB=WormBase Gene ID /WP=CE17620 /TR=Q18963 /GB=CAA87775.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 55      4grp_high_8_8 > 05      6grp_total > 70      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 104.7
(-1.7)
P 		81
(-2.9)
M 		78
(-3)
P 		198
(3)
P 		120
B 129.3
(0.6)
P 		85.4
(-2.3)
P 		75.4
(-3)
A 		165.2
(3)
P 		90
C 90.4
(-3)
P 		98.5
(-2.5)
P 		95.5
(-2.7)
P 		197.7
(3)
P 		107
avr 108.1
(-1.6) 		88.3
(-2.7) 		83
(-3) 		187
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 113.1
(-1.1)
M 		128
(0)
P 		108
(-1.5)
P 		167.9
(3)
P 		91.4
(-2.7)
P 		87.8
(-3)
M 		80
B 129.2
(0.6)
P 		121
(-3)
P 		123.5
(-1.9)
P 		134.8
(3)
P 		123.5
(-1.9)
P 		129.9
(0.9)
P 		14
C 111.7
(-0.2)
P 		112.8
(-0.1)
P 		113.2
(-0.1)
P 		102.6
(-1.1)
P 		81.9
(-3)
P 		146.1
(3)
P 		64
avr 118
(0.2) 		120.6
(0.6) 		114.9
(-0.3) 		135.1
(3) 		98.9
(-3) 		121.3
(0.7) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 38.1
(3)
P 		17.6
(-3)
M 		20.4
(-2.2)
P 		29
(0.3)
P 		21
B 41.2
(3)
P 		21.1
(-2.1)
P 		17.5
(-3)
A 		35.2
(1.5)
P 		24
C 29.9
(-1.1)
P 		28.3
(-3)
P 		33.3
(3)
P 		33.3
(3)
P 		5
avr 36.4
(3) 		22.3
(-3) 		23.7
(-2.4) 		32.5
(1.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 20.8
(-3)
M 		45.5
(3)
P 		23.5
(-2.3)
P 		42.6
(2.3)
P 		27.6
(-1.3)
P 		21.4
(-2.9)
M 		25
B 45
(1.5)
P 		40.3
(0.1)
P 		30
(-3)
P 		35.7
(-1.3)
P 		50.2
(3)
P 		48.4
(2.5)
P 		20
C 41.4
(1.4)
P 		34.4
(-0.1)
P 		28.8
(-1.3)
P 		20.6
(-3)
P 		26.5
(-1.7)
P 		48.9
(3)
P 		28
avr 35.7
(0.9) 		40.1
(3) 		27.4
(-3) 		33
(-0.4) 		34.8
(0.5) 		39.6
(2.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178627_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3373
Sequence Type Exemplar sequence
Representative Public ID D2013.3 NCBI
Target Description D2013.3 /REP_DB=WormBase Gene ID /WP=CE17620 /TR=Q18963 /GB=CAA87775.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063581 NCBI Caenorhabditis elegans D2013.3 (D2013.3) mRNA, complete cds. 11/11 None
SNAP00000019822 ENSEMBL cdna:SNAP chromosome:CEL140:II:9317600:9319384:-1 11/11 None
GENEFINDER00000019832 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9317717:9319384:-1 10/11 None
D2013.3 ENSEMBL cdna:known chromosome:CEL140:II:9317535:9319419:-1 gene:D2013.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9317596-9319381(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2013.3
Entrez Gene 174474 Entrez gene
SwissProt Q18963 EMBL-EBI
WormBase CE17620 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87775 Hypothetical protein D2013.3 [Caenorhabditis elegans] ref|NP_495982.1| D2013.3 [Caenorhabditis elegans] 0.0
blast CAE72914 Hypothetical protein CBG20232 [Caenorhabditis briggsae] 1.0E-102
blast CAE72914 Hypothetical protein CBG20232 [Caenorhabditis briggsae] 8.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0065
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.024
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.021
Sequence
Target Sequence 
>C. ELEGANS:178627_S_AT
agtcggaatggatctacctcaatcgatatattggaatgatgaaccaattgatgttgtaca
gtggtatccatcaaaacatcattacttatatgcaggacgacgagatggaacaattggact
atttgatattcggagcacacgtggagcaattgctgagaaatctcttcacaaatcacaaat
ttatggactaaaaatatctgccgatggacatcgtctcatctctgccgatagatcggggta
cattcatgtggcagatacgtgggatttcagcacaaaatttgatttttcctgtgaattcga
tccacttatgcagcgtcgtccaaatttggaatttatatatgagaaggatttttatgtggc
aacgaattttgaaaaactgacgatcattcggttttctgataatgataaatcaagaagaaa
tccagattttcgagaagttgaagcaaaagtgttgtgggataagcccttcatttttcgaaa
atcaagctatgagataatcacaggcttcaactacaatcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCGGAATGGATCTACCTCAATCG 159 59 525 Antisense
GATATTCGGAGCACACGTGGAGCAA 68 427 649 Antisense
TGCCGATGGACATCGTCTCATCTCT 597 585 723 Antisense
TCTCATCTCTGCCGATAGATCGGGG 59 611 738 Antisense
GATCGGGGTACATTCATGTGGCAGA 19 419 755 Antisense
GTGGCAGATACGTGGGATTTCAGCA 449 491 772 Antisense
GATTTTTCCTGTGAATTCGATCCAC 462 427 805 Antisense
TCCACTTATGCAGCGTCGTCCAAAT 199 589 825 Antisense
AACTGACGATCATTCGGTTTTCTGA 360 143 899 Antisense
TGGGATAAGCCCTTCATTTTTCGAA 305 553 979 Antisense
ATCACAGGCTTCAACTACAATCATC 19 29 1021 Antisense
Sequence Source Affymetrix Proprietary Database