[Home] | [Total List]

[178626_s_at]

Description W03H9.4 /REP_DB=WormBase Gene ID /WP=CE20137 /TR=Q9N6M0 /GB=CAB76738.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 131.2
(1.1)
P 		175.1
(3)
A 		164.9
(2.6)
A 		36.6
(-3)
A 		139
B 177.1
(3)
P 		67.4
(-3)
A 		128
(0.3)
A 		109
(-0.7)
A 		110
C 130.5
(-2)
P 		132.5
(-1.8)
M 		170.7
(3)
P 		122.7
(-3)
A 		48
avr 146.3
(2.2) 		125
(0.3) 		154.5
(3) 		89.4
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 83.4
(-3)
A 		164.9
(3)
P 		102.5
(-1.6)
A 		90.3
(-2.5)
A 		97.6
(-2)
A 		153.7
(2.2)
P 		82
B 138.6
(0.1)
P 		179
(3)
P 		144.7
(0.5)
A 		118
(-1.4)
A 		95.9
(-3)
A 		134.5
(-0.2)
P 		83
C 132.6
(0.4)
P 		156.9
(1.9)
P 		78.6
(-3)
A 		173.6
(3)
A 		103.5
(-1.4)
A 		114.1
(-0.8)
P 		95
avr 118.2
(-1.3) 		166.9
(3) 		108.6
(-2.2) 		127.3
(-0.5) 		99
(-3) 		134.1
(0.1) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 47.8
(3)
P 		38
(1.6)
A 		43.1
(2.3)
A 		5.4
(-3)
A 		42
B 56.5
(3)
P 		16.6
(-3)
A 		29.7
(-1)
A 		23.2
(-2)
A 		40
C 43.2
(0.5)
P 		38.1
(-0.3)
M 		59.5
(3)
P 		20.7
(-3)
A 		39
avr 49.2
(3) 		30.9
(-0.3) 		44.1
(2.1) 		16.4
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 15.4
(-3)
A 		58.6
(3)
P 		22.3
(-2)
A 		22.9
(-2)
A 		29.5
(-1)
A 		37.4
(0.1)
P 		43
B 48.2
(0.6)
P 		59.6
(3)
P 		35.1
(-2.2)
A 		31.3
(-3)
A 		39
(-1.4)
A 		50.2
(1)
P 		28
C 49.2
(3)
P 		47.9
(2.7)
P 		20
(-3)
A 		34.9
(0.1)
A 		33.5
(-0.2)
A 		38.2
(0.7)
P 		29
avr 37.6
(-0.6) 		55.4
(3) 		25.8
(-3) 		29.7
(-2.2) 		34
(-1.3) 		41.9
(0.3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178626_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3154
Sequence Type Exemplar sequence
Representative Public ID W03H9.4 NCBI
Target Description W03H9.4 /REP_DB=WormBase Gene ID /WP=CE20137 /TR=Q9N6M0 /GB=CAB76738.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064550 NCBI Caenorhabditis elegans W03H9.4 (W03H9.4) mRNA, complete cds. 11/11 None
GENEFINDER00000022867 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14133475:14136037:-1 11/11 None
W03H9.4 ENSEMBL cdna:known chromosome:CEL140:II:14133300:14142088:-1 gene:W03H9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14133471-14142014(-) 98.15 100.0
Public Domain and Genome References
Gene Title
Ensembl W03H9.4
Entrez Gene 175066 Entrez gene
SwissProt Q9N6M0 EMBL-EBI
WormBase CE20137 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265092_AT expressed protein at
ATGENOME1:17677_AT expressed protein at
CANINE_2:CFAAFFX.29310.1.S1_S_AT similar to CG1676-PA cfa
DROSOPHILA_2:1634714_AT cactin dm
DROSGENOME1:145427_AT cactin dm
CHICKEN:GGAAFFX.2053.1.S1_AT similar to R31449_3 gga
MG-U74CV2:128770_F_AT RIKEN cDNA 2510012J08 gene mm
MG-U74CV2:167815_F_AT RIKEN cDNA 2510012J08 gene mm
MOE430B:1452760_AT RIKEN cDNA 2510012J08 gene mm
MOUSE430_2:1452760_AT RIKEN cDNA 2510012J08 gene mm
MU19KSUBC:TC40803_AT PREDICTED: Mus musculus RIKEN cDNA 2510012J08 gene (2510012J08Rik), mRNA mm
MU19KSUBC:TC40803_G_AT PREDICTED: Mus musculus RIKEN cDNA 2510012J08 gene (2510012J08Rik), mRNA mm
RG-U34B:RC_AI070162_AT similar to R31449_3 rn
RAE230B:1384016_AT similar to R31449_3 rn
RAT230_2:1384016_AT similar to R31449_3 rn
Protein Similarities
Method ID Description E-Value
blast CAB76745 Hypothetical protein W03H9.4 [Caenorhabditis elegans] emb|CAB76738.1| Hypothetical protein W03H9.4 [Caenorhabditis elegans] ref|NP_496951.1| W03H9.4 [Caenorhabditis elegans] 0.0
blast CAE73535 Hypothetical protein CBG20998 [Caenorhabditis briggsae] 0.0
blast CAB76745 Hypothetical protein W03H9.4 [Caenorhabditis elegans] emb|CAB76738.1| Hypothetical protein W03H9.4 [Caenorhabditis elegans] ref|NP_496951.1| W03H9.4 [Caenorhabditis elegans] 1.0E-111
blast XP_624972 PREDICTED: similar to CG1676-PA [Apis mellifera] 1.0E-104
blast CAE73535 Hypothetical protein CBG20998 [Caenorhabditis briggsae] 9.0E-92
blast EAA10971 ENSANGP00000011538 [Anopheles gambiae str. PEST] ref|XP_316580.2| ENSANGP00000011538 [Anopheles gambiae str. PEST] 5.0E-64
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 9.60000038146973
Sequence
Target Sequence 
>C. ELEGANS:178626_S_AT
caatgcccggaatcgagatcctggatgagcaggccgacgtggataatctaacagaacgtc
gtaacaggaatcgtggaacacttccatcatcctccgccgcttcgtcaggagctccacaag
gagcatcatcgaaaatgatggcaatagctcgtgaagggatggaagccgatgaatcgatat
tcggagccgaagagcaactggcggctcagcgacacctctggtcggataaatatcgcccac
gcaaaccgacatatttgaatcgtgtccagactggattcgactggaataaatacaatcaga
cgcattatgatcaggataatccgccgccgaagattgtacagggatacaagtttaatatct
tctaccccgacctcctggacatgacagtggcgccaagattcggcttgacttcgtgtgaag
acccagattttgcgataattcgcttcaaagcaggacccccatatgaggatattgccttta
aagttgtcaatcgagaatgggaaactcttcataaaaatggatataaatgtcaattccaga
acggtgtcttccagttgtggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGCCCGGAATCGAGATCCTGGA 680 181 1424 Antisense
GGATGAGCAGGCCGACGTGGATAAT 283 513 1446 Antisense
GAAGAGCAACTGGCGGCTCAGCGAC 258 339 1612 Antisense
CTCAGCGACACCTCTGGTCGGATAA 368 229 1628 Antisense
CGGATAAATATCGCCCACGCAAACC 645 243 1646 Antisense
GATAATCCGCCGCCGAAGATTGTAC 605 421 1738 Antisense
CCGACCTCCTGGACATGACAGTGGC 4 263 1790 Antisense
TGACAGTGGCGCCAAGATTCGGCTT 279 571 1805 Antisense
GATTCGGCTTGACTTCGTGTGAAGA 54 433 1820 Antisense
AGCAGGACCCCCATATGAGGATATT 673 75 1872 Antisense
AGAACGGTGTCTTCCAGTTGTGGTT 684 71 1961 Antisense
Sequence Source Affymetrix Proprietary Database