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[178625_s_at]

Description F14H3.6 /REP_DB=WormBase Gene ID /WP=CE23652 /TR=O45367 /GB=CAB05487.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 33      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 5.8
(-3)
A 		59.6
(3)
A 		34.2
(0.2)
A 		24.7
(-0.9)
A 		54
B 40.9
(0.4)
A 		28.7
(-1.9)
A 		22.8
(-3)
A 		54.9
(3)
A 		32
C 31.7
(-3)
A 		38.3
(-1.7)
A 		62.7
(3)
M 		35.5
(-2.3)
A 		31
avr 26.1
(-3) 		42.2
(3) 		39.9
(2.1) 		38.4
(1.6) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1412
1 2 3 4 5 6 range
A 7.8
(-3)
A 		21.5
(-2.9)
A 		31.1
(-2.9)
A 		38.5
(-2.8)
A 		533.3
(-0.2)
P 		1124.2
(3)
P 		1116
B 36.1
(-3)
A 		37
(-3)
P 		42.3
(-3)
A 		50
(-2.9)
P 		613.6
(-0.2)
P 		1262.4
(3)
P 		1226
C 45.2
(-2.9)
A 		32.3
(-2.9)
A 		15.3
(-3)
A 		38.5
(-2.9)
A 		618.6
(-0.4)
P 		1419.9
(3)
P 		1405
avr 29.7
(-3) 		30.3
(-3) 		29.6
(-3) 		42.3
(-2.9) 		588.5
(-0.3) 		1268.8
(3) 		1239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.1
(-3)
A 		12.9
(3)
A 		8.9
(0.8)
A 		3.6
(-2.2)
A 		11
B 13
(3)
A 		7.1
(-1.6)
A 		5.3
(-3)
A 		11.7
(2)
A 		8
C 10.5
(-1.3)
A 		11
(-1.1)
A 		21.9
(3)
M 		6
(-3)
A 		16
avr 8.5
(-1.3) 		10.3
(0.9) 		12
(3) 		7.1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 474
1 2 3 4 5 6 range
A 1.4
(-3)
A 		7.6
(-2.9)
A 		6.8
(-2.9)
A 		9.8
(-2.8)
A 		160.9
(0.5)
P 		273.7
(3)
P 		272
B 12.5
(-3)
A 		12.3
(-3)
P 		10.3
(-3)
A 		13.2
(-3)
P 		249.3
(0.1)
P 		470.7
(3)
P 		460
C 16.8
(-2.8)
A 		9.9
(-2.9)
A 		3.9
(-3)
A 		7.7
(-3)
A 		200.2
(-0.5)
P 		475.3
(3)
P 		471
avr 10.2
(-3) 		9.9
(-3) 		7
(-3) 		10.2
(-3) 		203.5
(-0) 		406.6
(3) 		400
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178625_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14182
Sequence Type Exemplar sequence
Representative Public ID F14H3.6 NCBI
Target Description F14H3.6 /REP_DB=WormBase Gene ID /WP=CE23652 /TR=O45367 /GB=CAB05487.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074639(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074639 NCBI Caenorhabditis elegans F14H3.6 (F14H3.6) mRNA, complete cds. 11/11 None
SNAP00000013823 ENSEMBL cdna:SNAP chromosome:CEL140:V:16060192:16061462:-1 11/11 None
GENEFINDER00000013831 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16060192:16061462:-1 11/11 None
F14H3.6 ENSEMBL cdna:known chromosome:CEL140:V:16059909:16061475:-1 gene:F14H3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16060191-16061462(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14H3.6
Entrez Gene 180077 Entrez gene
SwissProt O45367 EMBL-EBI
WormBase CE23652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05487 Hypothetical protein F14H3.6 [Caenorhabditis elegans] ref|NP_507040.1| F14H3.6 [Caenorhabditis elegans] 1.0E-122
Sequence
Target Sequence 
>C. ELEGANS:178625_S_AT
tgaggacattactgcatcgggattggatgtactcattcacgcctgaacgagttcggcggt
atcacctcaaccgctccgactatctcaacgaagagatcaggcattcacagcgtgccataa
gaaatgctctactaggatataaacatgcaagcaattctcggaaaacttgccgaacagatc
tgcttgacacgacgtggatcctagaaaatttggagctcgttggtcgtcaactacctcgcg
aatctagttctcaggggaacccgaatcaagagagtgtgcaagaattacaccgccagattt
gtcaattgtttgaagatgatgcactcgctgtgtgcgaaagaggtcataatcaggaagtcg
cgttagacctggccagccaagtgattgcgacacacatgaggacgatcagagaatttcaag
aggaatatttcaaagtcaccggaaaaaagcatgagttgaagaaattggaggacaacgcat
acggggtactgttgactccttctccaaaacgaatgccgaagaacttccaacgacgtcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGACATTACTGCATCGGGATTG 72 567 143 Antisense
GGATTGGATGTACTCATTCACGCCT 162 509 162 Antisense
TGAACGAGTTCGGCGGTATCACCTC 372 573 186 Antisense
GATCAGGCATTCACAGCGTGCCATA 290 421 237 Antisense
GAACAGATCTGCTTGACACGACGTG 620 351 314 Antisense
AATTTGGAGCTCGTTGGTCGTCAAC 18 175 349 Antisense
CTACCTCGCGAATCTAGTTCTCAGG 472 223 373 Antisense
GAATTACACCGCCAGATTTGTCAAT 424 325 424 Antisense
CCTGGCCAGCCAAGTGATTGCGACA 27 267 510 Antisense
CATACGGGGTACTGTTGACTCCTTC 708 199 620 Antisense
GCCGAAGAACTTCCAACGACGTCGC 468 283 657 Antisense
Sequence Source Affymetrix Proprietary Database