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[178624_at]

Description C56A3.8 /REP_DB=WormBase Gene ID /WP=CE15739 /TR=O45318 /GB=CAB01138.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 84.5
(-3)
A 		169.9
(-0.5)
A 		278.6
(2.7)
P 		288.5
(3)
A 		204
B 96.4
(-3)
A 		129.1
(-1.7)
A 		202.9
(1.4)
A 		242.4
(3)
P 		146
C 89.4
(-3)
A 		175
(-0.5)
A 		241
(1.4)
P 		294
(3)
P 		205
avr 90.1
(-3) 		158
(-0.8) 		240.8
(1.9) 		275
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 556
1 2 3 4 5 6 range
A 63.1
(-3)
A 		104.7
(-2.5)
A 		141.8
(-2.1)
P 		269.5
(-0.7)
P 		479.8
(1.6)
P 		604.3
(3)
P 		541
B 73.4
(-2.8)
A 		59.6
(-3)
A 		129.2
(-2.2)
P 		226.1
(-1.1)
P 		482.2
(1.9)
P 		576.3
(3)
P 		517
C 67.5
(-3)
A 		73.8
(-2.9)
A 		152.2
(-2.1)
M 		266.6
(-0.8)
P 		371.3
(0.3)
P 		615.7
(3)
P 		548
avr 68
(-3) 		79.4
(-2.9) 		141.1
(-2.2) 		254.1
(-0.9) 		444.4
(1.3) 		598.8
(3) 		531
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 30.8
(-3)
A 		36.9
(-2.1)
A 		72.8
(3)
P 		42.2
(-1.4)
A 		42
B 30.7
(-3)
A 		31.9
(-2.7)
A 		47
(1.7)
A 		51.6
(3)
P 		21
C 29.6
(-3)
A 		50.3
(-0.7)
A 		84
(3)
P 		49.6
(-0.8)
P 		54
avr 30.4
(-3) 		39.7
(-1.5) 		67.9
(3) 		47.8
(-0.2) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 11.6
(-3)
A 		37.2
(-1.9)
A 		30.9
(-2.1)
P 		68.4
(-0.5)
P 		144.8
(2.9)
P 		147.1
(3)
P 		136
B 25.5
(-2.8)
A 		19.8
(-3)
A 		31.4
(-2.6)
P 		59.9
(-1.8)
P 		195.9
(2.4)
P 		214.9
(3)
P 		195
C 25
(-2.9)
A 		22.5
(-3)
A 		38.7
(-2.5)
M 		53.6
(-2)
P 		120.1
(0.2)
P 		206.1
(3)
P 		184
avr 20.7
(-3) 		26.5
(-2.8) 		33.7
(-2.5) 		60.6
(-1.6) 		153.6
(1.7) 		189.4
(3) 		169
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14604
Sequence Type Exemplar sequence
Representative Public ID C56A3.8 NCBI
Target Description C56A3.8 /REP_DB=WormBase Gene ID /WP=CE15739 /TR=O45318 /GB=CAB01138.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073957 NCBI Caenorhabditis elegans C56A3.8 (C56A3.8) mRNA, complete cds. 11/11 None
SNAP00000001398 ENSEMBL cdna:SNAP chromosome:CEL140:V:13559752:13564550:1 11/11 None
GENEFINDER00000001406 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13559752:13564550:1 11/11 None
C56A3.8 ENSEMBL cdna:known chromosome:CEL140:V:13563202:13564550:1 gene:C56A3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13563201-13564550(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56A3.8
Entrez Gene 179839 Entrez gene
SwissProt O45318 EMBL-EBI
WormBase CE15739 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16773 phosphotransferase activity, alcohol group as acceptor inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01138 Hypothetical protein C56A3.8 [Caenorhabditis elegans] ref|NP_506358.1| C56A3.8 [Caenorhabditis elegans] 0.0
blast CAE62562 Hypothetical protein CBG06673 [Caenorhabditis briggsae] 0.0
blast CAB01139 Hypothetical protein C56A3.7 [Caenorhabditis elegans] ref|NP_506357.3| C56A3.7 [Caenorhabditis elegans] 1.0E-148
blast CAB01139 Hypothetical protein C56A3.7 [Caenorhabditis elegans] ref|NP_506357.3| C56A3.7 [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 3.8E-88
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 3.8E-88
Pfam IPR001612 EMBL-EBI Caveolin 2.8E-115
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 3.8E-88
Pfam IPR001612 EMBL-EBI Caveolin 2.8E-115
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000001398 2 265-287,294-316
GENEFINDER00000001406 3 164-186,290-312,319-341
Sequence
Target Sequence 
>C. ELEGANS:178624_AT
tgtgcatcgtcgactacgtcatcagaaacaccgatcgccacatggataatctcctagtca
gacacgttccaggagaggagatcaatttggctgctatcgacaatggattggcatttccag
ttagacatccggaatgcacttcaagattccgctcattcccgtttcgttggtccaatcttc
catgggctcaaggcgagttcgatccggttctccgtcgtcacgtgctttcactgctcactc
cgcagtttgttcatagactgtgcgttgatttgaagaaacttttccgtcacggaatcgcta
gctccaactacatgcttgtgaacagccaacttcgtgtcgttcgtggacaaatttggaatc
tccgtcaggctattctcgcaaacgaatcgcctggtgagatggcttgtcgtgatccgatta
ttgtcagccgaagttcagacatcgtaatgagcaacccaccaccgcctcgtgggatgattg
gtttattgtcaagtcacctagctactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCATCGTCGACTACGTCATCAG 318 555 557 Antisense
TCAGAAACACCGATCGCCACATGGA 543 623 578 Antisense
AATCTCCTAGTCAGACACGTTCCAG 287 155 604 Antisense
GAATGCACTTCAAGATTCCGCTCAT 258 331 688 Antisense
CAATCTTCCATGGGCTCAAGGCGAG 376 179 729 Antisense
TCAAGGCGAGTTCGATCCGGTTCTC 204 633 744 Antisense
CTCACTCCGCAGTTTGTTCATAGAC 481 227 790 Antisense
GAATCGCTAGCTCCAACTACATGCT 499 329 848 Antisense
GAACAGCCAACTTCGTGTCGTTCGT 251 351 876 Antisense
TTGGAATCTCCGTCAGGCTATTCTC 57 709 909 Antisense
TATTGTCAAGTCACCTAGCTACTCC 301 665 1040 Antisense
Sequence Source Affymetrix Proprietary Database