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[178623_at]

Description T21B4.1 /REP_DB=WormBase Gene ID /WP=CE16426 /TR=O18098 /GB=CAB03370.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 05      6grp_cgc > 22      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 59.2
(2.6)
A 		22.1
(-3)
A 		50.2
(1.3)
A 		61.5
(3)
M 		39
B 54.5
(-0.3)
M 		64.6
(2.8)
A 		45.8
(-3)
A 		65.4
(3)
A 		20
C 39.1
(-2.1)
A 		44.8
(-1.2)
A 		33.4
(-3)
A 		71.3
(3)
A 		38
avr 50.9
(-1) 		43.8
(-2.8) 		43.1
(-3) 		66.1
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 68.7
(3)
A 		22.9
(-1.1)
A 		54.3
(1.7)
A 		1.5
(-3)
A 		40.6
(0.5)
A 		29
(-0.5)
A 		67
B 50.9
(2.9)
P 		52
(3)
A 		6.7
(-2.6)
A 		24.9
(-0.4)
A 		25
(-0.4)
A 		3.8
(-3)
A 		48
C 44.2
(3)
A 		41.3
(2.6)
A 		42.1
(2.7)
A 		2.1
(-3)
A 		40.5
(2.5)
A 		21.8
(-0.2)
A 		42
avr 54.6
(3) 		38.7
(0.9) 		34.4
(0.3) 		9.5
(-3) 		35.4
(0.4) 		18.2
(-1.8) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 21.6
(3)
A 		4.8
(-3)
A 		13.1
(-0)
A 		9
(-1.5)
M 		17
B 17.4
(3)
M 		16
(1.8)
A 		10.6
(-3)
A 		13.9
(-0.1)
A 		7
C 13
(3)
A 		12.9
(2.5)
A 		11.7
(-3)
A 		12
(-1.6)
A 		1
avr 17.3
(3) 		11.2
(-3) 		11.8
(-2.4) 		11.6
(-2.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 12.7
(3)
A 		8.1
(0.8)
A 		11.8
(2.6)
A 		0.4
(-3)
A 		12.3
(2.8)
A 		7.1
(0.3)
A 		12
B 17.7
(3)
P 		17.3
(2.9)
A 		1.6
(-2.9)
A 		6.6
(-1.1)
A 		10.1
(0.2)
A 		1.4
(-3)
A 		16
C 16.4
(3)
A 		12.6
(1.6)
A 		10.7
(0.9)
A 		0.4
(-3)
A 		13.1
(1.8)
A 		7.3
(-0.4)
A 		16
avr 15.6
(3) 		12.7
(1.7) 		8
(-0.5) 		2.5
(-3) 		11.8
(1.3) 		5.3
(-1.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3499
Sequence Type Exemplar sequence
Representative Public ID T21B4.1 NCBI
Target Description T21B4.1 /REP_DB=WormBase Gene ID /WP=CE16426 /TR=O18098 /GB=CAB03370.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064263(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064263 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-6) (srz-6) mRNA, complete cds. 9/11 None
T21B4.1 ENSEMBL cdna:known chromosome:CEL140:II:12492301:12493463:1 gene:T21B4.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006683 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12490113-12493215(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-6
Ensembl T21B4.1
Entrez Gene 188671 Entrez gene
SwissProt O18098 EMBL-EBI
WormBase CE37556 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03370 Hypothetical protein T21B4.1 [Caenorhabditis elegans] ref|NP_496664.2| Serpentine Receptor, class Z family member (srz-6) [Caenorhabditis elegans] 1.0E-164
blast CAE56391 Hypothetical protein CBG24077 [Caenorhabditis briggsae] 7.0E-53
blast NP_494565 Serpentine Receptor, class Z family member (srz-5) [Caenorhabditis elegans] gb|AAF60737.2| Serpentine receptor, class z protein 5 [Caenorhabditis elegans] 9.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.0E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496664.2 7 5-27,51-73,83-105,126-148,166-188,209-231,241-263
T21B4.1 7 5-27,51-73,83-105,126-148,166-188,209-231,241-263
Sequence
Target Sequence 
>C. ELEGANS:178623_AT
tcgacagtctctccaattttcaattttctgttggctatcctagcacttcagcgtttcctt
atatttttcctgccggattttgagaagttctttagtttcaaatcgaaaacatggaaggtt
tttattatacttctctacttcacattttttattgtcaatgctggaatggtttacgcgaaa
ggggactgggaagctcaaaattatacaatgttggagtgggaagtcggttacaatggaact
gaagttttggccgttatagatgaagcttacacggtaggtgggggagttggacctggattt
gccgcaagatattttactaccgtctacttctccttggaagccatcgccatactttccaca
gctctctattgccctatattcgttagtgtccgacagaagatccacctaatttccttggct
caatcaaaacctgatcgatacattcgttaccaagctgtcgtgatttgcgcgtcgaaaatg
ttttttatagtgttactgttttataatcagattattggcaccaaattcgcatctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACAGTCTCTCCAATTTTCAATT 682 601 631 Antisense
TTCTGTTGGCTATCCTAGCACTTCA 18 695 656 Antisense
AGCACTTCAGCGTTTCCTTATATTT 324 77 672 Antisense
TATACTTCTCTACTTCACATTTTTT 297 661 756 Antisense
TTGGACCTGGATTTGCCGCAAGATA 463 709 917 Antisense
GATATTTTACTACCGTCTACTTCTC 566 425 938 Antisense
TCTACTTCTCCTTGGAAGCCATCGC 145 615 953 Antisense
CTCTCTATTGCCCTATATTCGTTAG 446 231 992 Antisense
AAGATCCACCTAATTTCCTTGGCTC 51 155 1027 Antisense
TACCAAGCTGTCGTGATTTGCGCGT 40 651 1078 Antisense
TATTGGCACCAAATTCGCATCTGAA 674 665 1143 Antisense
Sequence Source Affymetrix Proprietary Database