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[178622_at]

Description T01C3.8 /REP_DB=WormBase Gene ID /WP=CE23936 /TR=Q22061 /GB=CAB01665.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 93      6grp_total > 76      4grp_total > 31      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 415.9
(3)
P 		253.6
(-3)
P 		265.4
(-2.6)
P 		330.5
(-0.2)
P 		162
B 406
(3)
P 		291.8
(-1.9)
P 		265.2
(-3)
P 		351.3
(0.7)
P 		141
C 386.8
(3)
P 		255.6
(-3)
P 		256.4
(-3)
P 		268.6
(-2.4)
P 		131
avr 402.9
(3) 		267
(-2.8) 		262.3
(-3) 		316.8
(-0.7) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 292.6
(-3)
P 		326.7
(-2.4)
P 		410.7
(-1)
P 		411.4
(-1)
P 		449.7
(-0.3)
P 		645.6
(3)
P 		353
B 358.2
(-2.1)
P 		319.7
(-3)
P 		380.3
(-1.6)
P 		412.3
(-0.9)
P 		448.5
(-0)
P 		580.9
(3)
P 		261
C 328
(-3)
P 		352.2
(-2.3)
P 		434.1
(0.2)
P 		381.7
(-1.4)
P 		347.2
(-2.4)
P 		528.5
(3)
P 		201
avr 326.3
(-3) 		332.9
(-2.8) 		408.4
(-1.1) 		401.8
(-1.2) 		415.1
(-0.9) 		585
(3) 		259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 151.4
(3)
P 		55
(-2.6)
P 		69.4
(-1.8)
P 		48.4
(-3)
P 		103
B 129.5
(3)
P 		72.1
(-2.1)
P 		61.4
(-3)
P 		74.9
(-1.8)
P 		68
C 128
(3)
P 		73.5
(-1)
P 		89.4
(0.2)
P 		45.3
(-3)
P 		83
avr 136.3
(3) 		66.9
(-2.2) 		73.4
(-1.7) 		56.2
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 53.9
(-3)
P 		116.2
(0.6)
P 		89.4
(-0.9)
P 		104.3
(-0.1)
P 		135.7
(1.8)
P 		157.2
(3)
P 		103
B 124.6
(-1.4)
P 		106.4
(-2.3)
P 		92.4
(-3)
P 		109.2
(-2.2)
P 		182.2
(1.3)
P 		216.6
(3)
P 		124
C 121.6
(-0.3)
P 		107.5
(-1.2)
P 		110.5
(-1)
P 		76.8
(-3)
P 		112.4
(-0.9)
P 		176.9
(3)
P 		100
avr 100
(-2.8) 		110
(-2.1) 		97.4
(-3) 		96.8
(-3) 		143.4
(0.2) 		183.6
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178622_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14601
Sequence Type Exemplar sequence
Representative Public ID T01C3.8 NCBI
Target Description T01C3.8 /REP_DB=WormBase Gene ID /WP=CE23936 /TR=Q22061 /GB=CAB01665.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074291 NCBI Caenorhabditis elegans T01C3.8 (T01C3.8) mRNA, complete cds. 11/11 None
SNAP00000022416 ENSEMBL cdna:SNAP chromosome:CEL140:V:15004821:15007395:1 11/11 None
GENEFINDER00000022430 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15004821:15007395:1 11/11 None
T01C3.8 ENSEMBL cdna:known chromosome:CEL140:V:15005177:15007641:1 gene:T01C3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15005298-15007395(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01C3.8
Entrez Gene 180000 Entrez gene
SwissProt Q22061 EMBL-EBI
WormBase CE23936 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01665 Hypothetical protein T01C3.8 [Caenorhabditis elegans] ref|NP_506692.1| T01C3.8 [Caenorhabditis elegans] 0.0
blast CAE66336 Hypothetical protein CBG11587 [Caenorhabditis briggsae] 2.0E-51
blast CAE66336 Hypothetical protein CBG11587 [Caenorhabditis briggsae] 8.0E-49
blast CAE66336 Hypothetical protein CBG11587 [Caenorhabditis briggsae] 7.0E-34
Sequence
Target Sequence 
>C. ELEGANS:178622_AT
ctggacggagagacaaaccccgccgtgaacgcattctcgtcataacacgaacgacggaaa
catgtattcgtgtgatgatgtacctgaggctgaaaatgcaaactttagctgtgaaccttc
gttataatattcataaaattacaacatgcgactccgaagaagatgtggaaaaacgaaact
ttgagtttcgcacgggtaatctcgatgtgcttgtgatcgactggagatcaattcgcgctg
ttcaccgaggcgccgtcgacactatcgttatgtttgattctccgcatccactatattttc
aaacaattatggagacggagttgcagaacctcgcttcgattattggagtgaaactgaagt
tatacatgattatcgaccagaataaggactttcgcctcgttcgcgaatatttaaagtttc
tcgaatgcaacaaaacacgagcgcccacgtggttccgcgatctttaccaaaaatacctgg
cggatcgacaatcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGACGGAGAGACAAACCCCGCCG 335 241 1097 Antisense
GTGAACGCATTCTCGTCATAACACG 12 483 1121 Antisense
GCAAACTTTAGCTGTGAACCTTCGT 375 315 1194 Antisense
GAGTTTCGCACGGGTAATCTCGATG 658 397 1279 Antisense
GACTGGAGATCAATTCGCGCTGTTC 441 375 1315 Antisense
TCGTTATGTTTGATTCTCCGCATCC 182 605 1361 Antisense
TCTCCGCATCCACTATATTTTCAAA 314 611 1375 Antisense
AGACGGAGTTGCAGAACCTCGCTTC 472 71 1409 Antisense
AGAATAAGGACTTTCGCCTCGTTCG 235 71 1475 Antisense
ACAAAACACGAGCGCCCACGTGGTT 506 109 1526 Antisense
AATACCTGGCGGATCGACAATCGAG 347 171 1568 Antisense
Sequence Source Affymetrix Proprietary Database