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[178621_at]

Description T24B8.3 /REP_DB=WormBase Gene ID /WP=CE03711 /TR=Q22719 /GB=CAA92760.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 20      6grp_total > 07      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1190
1 2 3 4 range
A 1282.2
(3)
P 		664.2
(-0.9)
P 		578
(-1.4)
P 		325.8
(-3)
P 		956
B 1204.3
(3)
P 		611.7
(-1.7)
P 		591
(-1.9)
P 		450.9
(-3)
P 		753
C 1516
(3)
P 		650.3
(-1.5)
P 		720.2
(-1.2)
P 		366.3
(-3)
P 		1150
avr 1334.2
(3) 		642.1
(-1.4) 		629.7
(-1.4) 		381
(-3) 		953

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2673
1 2 3 4 5 6 range
A 872.7
(2.7)
P 		914
(3)
P 		851.8
(2.5)
P 		678.2
(1.1)
P 		184.6
(-3)
P 		392.1
(-1.3)
P 		729
B 1654.3
(3)
P 		1206.3
(0.9)
P 		1187.6
(0.8)
P 		555.4
(-2.2)
P 		377.8
(-3)
P 		405.9
(-2.9)
P 		1277
C 2857.6
(3)
P 		1299.4
(-0.9)
P 		790.4
(-2.1)
P 		498.9
(-2.8)
P 		429.3
(-3)
P 		568.4
(-2.7)
P 		2428
avr 1794.9
(3) 		1139.9
(0.3) 		943.3
(-0.5) 		577.5
(-2) 		330.6
(-3) 		455.5
(-2.5) 		1464
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 454
1 2 3 4 range
A 466.9
(3)
P 		144.2
(-1.6)
P 		151.1
(-1.5)
P 		47.7
(-3)
P 		419
B 384.1
(3)
P 		151.1
(-1.9)
P 		137
(-2.1)
P 		96.1
(-3)
P 		288
C 501.8
(3)
P 		187
(-1.3)
P 		251
(-0.4)
P 		61.8
(-3)
P 		440
avr 450.9
(3) 		160.8
(-1.6) 		179.7
(-1.3) 		68.5
(-3) 		382

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1004
1 2 3 4 5 6 range
A 160.9
(-0.7)
P 		325
(3)
P 		185.5
(-0.1)
P 		172
(-0.4)
P 		55.7
(-3)
P 		95.5
(-2.1)
P 		269
B 575.6
(3)
P 		401.5
(0.6)
P 		288.4
(-1)
P 		147.1
(-3)
P 		153.5
(-2.9)
P 		151.3
(-2.9)
P 		429
C 1059.2
(3)
P 		396.5
(-1.1)
P 		201.2
(-2.4)
P 		100.3
(-3)
P 		138.9
(-2.8)
P 		190.3
(-2.4)
P 		959
avr 598.6
(3) 		374.3
(0.2) 		225
(-1.6) 		139.8
(-2.7) 		116
(-3) 		145.7
(-2.6) 		483
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178621_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3712
Sequence Type Exemplar sequence
Representative Public ID T24B8.3 NCBI
Target Description T24B8.3 /REP_DB=WormBase Gene ID /WP=CE03711 /TR=Q22719 /GB=CAA92760.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027187(9), NM_001027186(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027187 NCBI Caenorhabditis elegans T24B8.3b (T24B8.3) mRNA, complete cds. 9/11 None
NM_001027186 NCBI Caenorhabditis elegans T24B8.3a (T24B8.3) mRNA, complete cds. 9/11 None
T24B8.3b.1 ENSEMBL cdna:known chromosome:CEL140:II:9059299:9061023:-1 gene:T24B8.3 9/11 A 
T24B8.3b.2 ENSEMBL cdna:known chromosome:CEL140:II:9059299:9061023:-1 gene:T24B8.3 9/11 A 
T24B8.3a.1 ENSEMBL cdna:known chromosome:CEL140:II:9059311:9061047:-1 gene:T24B8.3 9/11 None
T24B8.3a.2 ENSEMBL cdna:known chromosome:CEL140:II:9059311:9061049:-1 gene:T24B8.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039889 2/11 Cross Hyb Matching Probes None
GENEFINDER00000039899 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9060761-9061186(-) 58.28 58.28
Public Domain and Genome References
Ensembl T24B8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92760 Hypothetical protein T24B8.3a [Caenorhabditis elegans] ref|NP_001022357.1| T24B8.3a [Caenorhabditis elegans] 1.0E-18
blast CAE48509 Hypothetical protein T24B8.3b [Caenorhabditis elegans] ref|NP_001022358.1| T24B8.3b [Caenorhabditis elegans] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:178621_AT
attttcattgtaatccatcattgtctaaatctaaatcaacttgttttttcaacctcaacc
accatccaccacatcatcatgtctgccgttgaagagagacaaacagagaagagagccctt
gataagggagatgagaacgacgacgtcgtgccaaccaaggaggccagaatcgagaatgga
aagaccgaggaggagccagctgaaaaggtcaccaaagaagatgctgaaggagaggaggaa
ggagatgatgaggatgctgatgatgaggaagacgaggtaaatgatgaggattcgtcggaa
ggagaaggtgaaggatctgatgctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCATTGTAATCCATCATTGTC 375 15 46 Antisense
GTAATCCATCATTGTCTAAATCTAA 292 463 55 Antisense
CACATCATCATGTCTGCCGTTGAAG 16 197 115 Antisense
AACAGAGAAGAGAGCCCTTGATAAG 240 135 147 Antisense
GAGAACGACGACGTCGTGCCAACCA 655 391 178 Antisense
ACGTCGTGCCAACCAAGGAGGCCAG 348 93 188 Antisense
ACCAAGGAGGCCAGAATCGAGAATG 513 81 199 Antisense
AAGACCGAGGAGGAGCCAGCTGAAA 480 153 226 Antisense
GGAGCCAGCTGAAAAGGTCACCAAA 179 523 237 Antisense
AATGATGAGGATTCGTCGGAAGGAG 709 161 325 Antisense
GAGAAGGTGAAGGATCTGATGCTGG 683 391 347 Antisense
Sequence Source Affymetrix Proprietary Database